Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.606s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.262s passed
testCountVariantsWithIntervals[10](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.254s passed
testCountVariantsWithIntervals[11](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.262s passed
testCountVariantsWithIntervals[1](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.265s passed
testCountVariantsWithIntervals[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.255s passed
testCountVariantsWithIntervals[3](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.245s passed
testCountVariantsWithIntervals[4](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.259s passed
testCountVariantsWithIntervals[5](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.265s passed
testCountVariantsWithIntervals[6](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.258s passed
testCountVariantsWithIntervals[7](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.254s passed
testCountVariantsWithIntervals[8](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.258s passed
testCountVariantsWithIntervals[9](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.262s passed
testNoNPRWhenOutputIsUnspecified 0.096s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.110s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.103s passed
test[2](/gatkCloneMountPoint/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.198s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[June 12, 2025 at 8:59:46 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:46 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:48 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:48 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:49 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:49 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:49 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:49 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:50 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:50 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:50 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:50 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:51 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:51 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:51 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424
[June 12, 2025 at 8:59:51 PM GMT] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=916455424