Class org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContaminationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.contamination > CalculateContaminationIntegrationTest
11

tests
0

failures
0

ignored
8.043s

duration
100%

successful

Tests

Test Duration Result
testArtificialData[0](true) 0.374s passed
testArtificialData[1](false) 0.395s passed
testMatchedNormal 2.247s passed
testSmallGenePanelErrorBars[0](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/small-panel-pileups1.tsv) 0.082s passed
testSmallGenePanelErrorBars[1](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/small-panel-pileups2.tsv) 0.091s passed
testSmallGenePanelErrorBars[2](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/small-panel-pileups3.tsv) 0.081s passed
testSmallGenePanelWithNoHomAlts 0.080s passed
testSpikeIn[0](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/NA12891_0.01_NA12892_0.99.table, 0.01, 0.001) 1.265s passed
testSpikeIn[1](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/NA12891_0.03_NA12892_0.97.table, 0.03, 0.001) 1.173s passed
testSpikeIn[2](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/NA12891_0.05_NA12892_0.95.table, 0.05, 0.001) 1.089s passed
testSpikeIn[3](src/test/resources/org/broadinstitute/hellbender/tools/calculatecontamination/NA12891_0.08_NA12892_0.92.table, 0.08, 0.001) 1.166s passed

Standard error

[June 12, 2025 at 9:05:53 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:05:54 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:05:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:05:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:05:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:05:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:05:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:05:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:05:59 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:06:00 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:06:01 PM GMT] org.broadinstitute.hellbender.tools.walkers.contamination.CalculateContamination done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1920991232