Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.269s |
passed |
| testASEReadCounterImproperPairs |
3.201s |
passed |
| testASEReadCounterMinDepth70 |
0.208s |
passed |
| testASEReadCounterMultipleContexts |
0.149s |
passed |
| testASEReadCounterNonRefAllele |
0.145s |
passed |
| testASEReadCounterWarnings |
0.209s |
passed |
| testASEReadCounterWithCountOverlaps |
0.205s |
passed |
| testASEReadCounterWithCountReads |
0.210s |
passed |
| testASEReadCounterWithHighMQ |
0.202s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.202s |
passed |
| testASEReadCounterWithLowMQ |
0.206s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.208s |
passed |
Standard output
--------------------------------------------------------------------------------
[21:08:52] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[21:08:52] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[21:08:56] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[21:08:56] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[21:08:56] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[21:08:57] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[21:08:57] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[21:08:57] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[21:08:57] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[June 12, 2025 at 9:08:52 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:56 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232
[June 12, 2025 at 9:08:57 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1920991232