Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
14.765s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 8.216s passed
testCompareReadStrands[1](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, CDS, true) 1.988s passed
testConsistentWithPast[0](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.806s passed
testConsistentWithPast[1](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.833s passed
testConsistentWithPast[2](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 0.939s passed
testConsistentWithPast[3](/gatkCloneMountPoint/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /gatkCloneMountPoint/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 0.994s passed
testConsistentWithPast[4](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.242s passed
testConsistentWithPast[5](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.245s passed
testConsistentWithPast[6](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.268s passed
testConsistentWithPast[7](/gatkCloneMountPoint/src/test/resources/large/E_Coli_small_rna.bam, /gatkCloneMountPoint/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.234s passed

Standard error

[June 12, 2025 at 9:08:59 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2336227328
[June 12, 2025 at 9:09:00 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2336227328
[June 12, 2025 at 9:09:01 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2336227328
[June 12, 2025 at 9:09:02 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2694840320
[June 12, 2025 at 9:09:03 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2694840320
[June 12, 2025 at 9:09:04 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2900361216
[June 12, 2025 at 9:09:05 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2900361216
[June 12, 2025 at 9:09:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:06 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:07 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:07 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:07 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:07 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:08 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:09 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:09 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2321547264
[June 12, 2025 at 9:09:10 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2862612480
[June 12, 2025 at 9:09:11 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2862612480
[June 12, 2025 at 9:09:11 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2862612480
[June 12, 2025 at 9:09:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2862612480
[June 12, 2025 at 9:09:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2862612480
[June 12, 2025 at 9:09:12 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2862612480