Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.312s |
passed |
| testSplitsFixNDN |
0.115s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.769s |
passed |
| testSplitsTargetRegionFunctionality |
0.285s |
passed |
| testSplitsWithOverhangs |
0.499s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.397s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.317s |
passed |
| testSplitsWithOverhangsNotClipping |
0.318s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.536s |
passed |
Standard output
--------------------------------------------------------------------------------
[21:09:24] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
--------------------------------------------------------------------------------
[21:09:24] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
--------------------------------------------------------------------------------
[21:09:25] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
--------------------------------------------------------------------------------
[21:09:26] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
--------------------------------------------------------------------------------
[21:09:26] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
--------------------------------------------------------------------------------
[21:09:27] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
--------------------------------------------------------------------------------
[21:09:27] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[21:09:27] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[June 12, 2025 at 9:09:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 9:09:24 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 9:09:25 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 9:09:26 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 9:09:26 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 9:09:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 9:09:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 9:09:27 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=671088640
[June 12, 2025 at 9:09:28 PM GMT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=595591168