Package org.broadinstitute.hellbender.tools.spark.sv.integration
|
100%
successful |
Ignored tests
- CpxVariantReInterpreterSparkIntegrationTest. testRunHDFS[0](org.broadinstitute.hellbender.tools.spark.sv.integration.CpxVariantReInterpreterSparkIntegrationTest$CpxVariantReInterpreterSparkIntegrationTestArgs@5e160f3e)
- DiscoverVariantsFromContigAlignmentsSAMSparkIntegrationTest. testDiscoverVariantsRunnableMiniCluster[0](org.broadinstitute.hellbender.tools.spark.sv.integration.DiscoverVariantsFromContigAlignmentsSAMSparkIntegrationTest$DiscoverVariantsFromContigAlignmentsSAMSparkIntegrationTestArgs@4da0670)
- FindBreakpointEvidenceSparkIntegrationTest. testFindBreakpointRunnableMiniCluster[0](FindBreakpointEvidenceSparkIntegrationTestArgs{bam-loc='/gatkCloneMountPoint/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-ref-index-img-loc='/gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.fasta.img', output-dir='/tmp/forNew7622111378351314901', bam-coverage='10.0'})
- StructuralVariationDiscoveryPipelineSparkIntegrationTest. testSVDiscoverPipelineRunnableMiniCluster[0](StructuralVariationDiscoveryPipelineSparkIntegrationTestArgs{bam-loc='/gatkCloneMountPoint/src/test/resources/large//sv/SVIntegrationTest_hg19.bam', kmer-ignore-list-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/dummy.kill.kmers', aligner-fef-index-img-loc='/gatkCloneMountPoint/src/test/resources/large/human_g1k_v37.20.21.fasta.img', cnv-calls-loc='src/test/resources/org/broadinstitute/hellbender/tools/spark/sv/integration/inputs/hg19_DEL_cnv_calls.vcf', output-dir='/tmp/new636181522863526254'})
Classes
| Class | Tests | Failures | Ignored | Duration | Success rate |
|---|---|---|---|---|---|
| CpxVariantReInterpreterSparkIntegrationTest | 2 | 0 | 1 | 1.293s | 100% |
| DiscoverVariantsFromContigAlignmentsSAMSparkIntegrationTest | 2 | 0 | 1 | 0.369s | 100% |
| ExtractOriginalAlignmentRecordsByNameSparkIntegrationTest | 2 | 0 | 0 | 0.868s | 100% |
| FindBreakpointEvidenceSparkIntegrationTest | 2 | 0 | 1 | 2.712s | 100% |
| StructuralVariationDiscoveryPipelineSparkIntegrationTest | 2 | 0 | 1 | 2.896s | 100% |
| SvDiscoverFromLocalAssemblyContigAlignmentsSparkIntegrationTest | 2 | 0 | 0 | 5.334s | 100% |