20:33:53.274 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.274 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.275 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.275 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.275 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.275 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.275 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.275 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.275 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.275 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.276 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.276 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.276 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.276 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.276 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.276 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.276 INFO TestMultiVariantWalker - Initializing engine
20:33:53.277 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
20:33:53.278 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.284 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.284 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.284 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.284 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.284 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.285 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.285 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.285 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.285 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.285 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.285 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.285 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.285 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.285 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.285 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.285 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.286 INFO TestMultiVariantWalker - Initializing engine
20:33:53.287 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:33:53.288 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
20:33:53.292 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.292 INFO ProgressMeter - Starting traversal
20:33:53.292 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.295 INFO ProgressMeter - unmapped 0.0 26 520000.0
20:33:53.295 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:33:53.295 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.300 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.300 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.300 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.300 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.301 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.301 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.301 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.301 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.301 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.301 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.301 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.301 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.301 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.301 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.301 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.301 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.302 INFO TestMultiVariantWalker - Initializing engine
20:33:53.302 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
20:33:53.304 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
20:33:53.305 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.310 INFO TestMultiVariantWalkerIterator - ------------------------------------------------------------
20:33:53.311 INFO TestMultiVariantWalkerIterator - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.311 INFO TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.311 INFO TestMultiVariantWalkerIterator - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.311 INFO TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.311 INFO TestMultiVariantWalkerIterator - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.311 INFO TestMultiVariantWalkerIterator - ------------------------------------------------------------
20:33:53.311 INFO TestMultiVariantWalkerIterator - ------------------------------------------------------------
20:33:53.312 INFO TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.312 INFO TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.312 INFO TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.312 INFO TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.312 INFO TestMultiVariantWalkerIterator - Deflater: IntelDeflater
20:33:53.312 INFO TestMultiVariantWalkerIterator - Inflater: IntelInflater
20:33:53.312 INFO TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
20:33:53.312 INFO TestMultiVariantWalkerIterator - Requester pays: disabled
20:33:53.312 INFO TestMultiVariantWalkerIterator - Initializing engine
20:33:53.313 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
20:33:53.315 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
20:33:53.317 INFO TestMultiVariantWalkerIterator - Done initializing engine
20:33:53.317 INFO ProgressMeter - Starting traversal
20:33:53.317 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.318 INFO ProgressMeter - unmapped 0.0 28 1680000.0
20:33:53.318 INFO ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
20:33:53.318 INFO TestMultiVariantWalkerIterator - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.325 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.325 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.325 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.325 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.325 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.326 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.326 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.326 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.326 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.326 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.326 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.326 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.326 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.326 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.326 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.326 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.326 INFO TestMultiVariantWalker - Initializing engine
20:33:53.327 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
20:33:53.329 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
20:33:53.330 WARN MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
20:33:53.330 WARN MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
20:33:53.331 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.336 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.336 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.336 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.336 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.336 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.337 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.337 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.337 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.337 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.337 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.337 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.337 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.337 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.337 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.337 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.337 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.337 INFO TestMultiVariantWalker - Initializing engine
20:33:53.338 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:33:53.339 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
20:33:53.340 WARN MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
20:33:53.341 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.341 INFO ProgressMeter - Starting traversal
20:33:53.341 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.342 INFO ProgressMeter - unmapped 0.0 26 1560000.0
20:33:53.342 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:33:53.342 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.347 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.347 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.347 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.347 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.347 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.347 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.347 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.347 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.348 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.348 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.348 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.348 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.348 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.348 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.348 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.348 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.348 INFO TestMultiVariantWalker - Initializing engine
20:33:53.349 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
20:33:53.350 WARN MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
20:33:53.350 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.350 INFO ProgressMeter - Starting traversal
20:33:53.350 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.350 INFO ProgressMeter - unmapped 0.0 13 Infinity
20:33:53.350 INFO ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
20:33:53.350 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.356 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.356 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.356 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.356 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.356 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.356 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.356 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.356 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.356 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.356 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.356 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.357 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.357 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.357 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.357 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.357 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.357 INFO TestMultiVariantWalker - Initializing engine
20:33:53.358 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
20:33:53.358 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.358 INFO ProgressMeter - Starting traversal
20:33:53.358 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.359 INFO ProgressMeter - unmapped 0.0 26 1560000.0
20:33:53.359 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:33:53.359 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.364 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.364 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.364 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.364 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.364 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.364 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.364 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.364 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.365 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.365 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.365 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.365 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.365 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.365 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.365 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.365 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.365 INFO TestMultiVariantWalker - Initializing engine
20:33:53.366 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:33:53.367 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.367 INFO ProgressMeter - Starting traversal
20:33:53.367 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.368 INFO ProgressMeter - unmapped 0.0 13 780000.0
20:33:53.368 INFO ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
20:33:53.368 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.374 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.374 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.374 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.374 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.374 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.374 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.374 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.374 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.374 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.374 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.374 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.375 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.375 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.375 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.375 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.375 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.375 INFO TestMultiVariantWalker - Initializing engine
20:33:53.376 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:33:53.377 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
20:33:53.379 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.379 INFO ProgressMeter - Starting traversal
20:33:53.379 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.379 INFO ProgressMeter - unmapped 0.0 26 Infinity
20:33:53.379 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:33:53.379 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.384 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.384 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.384 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.384 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.385 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.385 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.385 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.385 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.385 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.385 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.385 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.385 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.385 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.385 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.385 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.385 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.385 INFO TestMultiVariantWalker - Initializing engine
20:33:53.386 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
20:33:53.387 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
20:33:53.389 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.389 INFO ProgressMeter - Starting traversal
20:33:53.389 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.390 INFO ProgressMeter - unmapped 0.0 26 1560000.0
20:33:53.390 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
20:33:53.390 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.396 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.396 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.396 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.396 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.396 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.396 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.396 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.396 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.397 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.397 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.397 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.397 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.397 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.397 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.397 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.397 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.397 INFO TestMultiVariantWalker - Initializing engine
20:33:53.398 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
20:33:53.399 INFO IntervalArgumentCollection - Processing 16000 bp from intervals
20:33:53.399 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.399 INFO ProgressMeter - Starting traversal
20:33:53.399 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.400 INFO ProgressMeter - unmapped 0.0 14 840000.0
20:33:53.400 INFO ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
20:33:53.400 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.405 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.405 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.405 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.405 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.405 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.405 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.406 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.406 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.406 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.406 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.406 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.406 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.406 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.406 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.406 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.406 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.406 INFO TestMultiVariantWalker - Initializing engine
20:33:53.407 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:33:53.408 INFO IntervalArgumentCollection - Processing 16000 bp from intervals
20:33:53.408 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.408 INFO ProgressMeter - Starting traversal
20:33:53.408 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.409 INFO ProgressMeter - unmapped 0.0 7 Infinity
20:33:53.409 INFO ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
20:33:53.409 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.414 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.414 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.414 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.414 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.414 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.414 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.414 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.414 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.415 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.415 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.415 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.415 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.415 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.415 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.415 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.415 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.415 INFO TestMultiVariantWalker - Initializing engine
20:33:53.416 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:33:53.418 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
20:33:53.419 INFO IntervalArgumentCollection - Processing 16000 bp from intervals
20:33:53.419 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.419 INFO ProgressMeter - Starting traversal
20:33:53.419 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.420 INFO ProgressMeter - unmapped 0.0 14 840000.0
20:33:53.420 INFO ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
20:33:53.420 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824
20:33:53.425 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.425 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:53.425 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:53.425 INFO TestMultiVariantWalker - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:33:53.425 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:53.426 INFO TestMultiVariantWalker - Start Date/Time: June 12, 2025 at 8:33:53 PM UTC
20:33:53.426 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.426 INFO TestMultiVariantWalker - ------------------------------------------------------------
20:33:53.426 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:53.426 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:53.426 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:53.426 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:53.426 INFO TestMultiVariantWalker - Deflater: IntelDeflater
20:33:53.426 INFO TestMultiVariantWalker - Inflater: IntelInflater
20:33:53.426 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
20:33:53.426 INFO TestMultiVariantWalker - Requester pays: disabled
20:33:53.426 INFO TestMultiVariantWalker - Initializing engine
20:33:53.427 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
20:33:53.428 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
20:33:53.430 INFO IntervalArgumentCollection - Processing 401 bp from intervals
20:33:53.430 INFO TestMultiVariantWalker - Done initializing engine
20:33:53.430 INFO ProgressMeter - Starting traversal
20:33:53.430 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
20:33:53.430 INFO ProgressMeter - unmapped 0.0 3 Infinity
20:33:53.430 INFO ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
20:33:53.431 INFO TestMultiVariantWalker - Shutting down engine
[June 12, 2025 at 8:33:53 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1860173824