Class org.broadinstitute.hellbender.tools.GetSampleNameIntegrationTest
Tests
| Test |
Duration |
Result |
| testBasicUsage |
0.073s |
passed |
| testMultiSampleBam |
0.087s |
passed |
| testUrlEncoding |
0.074s |
passed |
Standard error
20:36:46.831 INFO GetSampleName - ------------------------------------------------------------
20:36:46.831 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
20:36:46.831 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
20:36:46.831 INFO GetSampleName - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:36:46.831 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:36:46.831 INFO GetSampleName - Start Date/Time: June 12, 2025 at 8:36:46 PM UTC
20:36:46.831 INFO GetSampleName - ------------------------------------------------------------
20:36:46.831 INFO GetSampleName - ------------------------------------------------------------
20:36:46.831 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:36:46.831 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:36:46.831 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:36:46.831 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:36:46.832 INFO GetSampleName - Deflater: IntelDeflater
20:36:46.832 INFO GetSampleName - Inflater: IntelInflater
20:36:46.832 INFO GetSampleName - GCS max retries/reopens: 20
20:36:46.832 INFO GetSampleName - Requester pays: disabled
20:36:46.832 INFO GetSampleName - Initializing engine
20:36:46.832 INFO GetSampleName - Done initializing engine
20:36:46.833 INFO ProgressMeter - Starting traversal
20:36:46.833 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
20:36:46.833 INFO ProgressMeter - unmapped 0.0 0 NaN
20:36:46.833 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
20:36:46.833 INFO GetSampleName - Shutting down engine
[June 12, 2025 at 8:36:46 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:46 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
20:36:46.995 INFO GetSampleName - ------------------------------------------------------------
20:36:46.995 INFO GetSampleName - org.broadinstitute.hellbender.tools vUnavailable
20:36:46.995 INFO GetSampleName - For support and documentation go to https://software.broadinstitute.org/gatk/
20:36:46.995 INFO GetSampleName - Executing as runner@pkrvmxyh4eaekms on Linux v6.11.0-1015-azure amd64
20:36:46.995 INFO GetSampleName - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:36:46.995 INFO GetSampleName - Start Date/Time: June 12, 2025 at 8:36:46 PM UTC
20:36:46.996 INFO GetSampleName - ------------------------------------------------------------
20:36:46.996 INFO GetSampleName - ------------------------------------------------------------
20:36:46.996 INFO GetSampleName - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:36:46.996 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:36:46.996 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:36:46.996 INFO GetSampleName - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:36:46.996 INFO GetSampleName - Deflater: IntelDeflater
20:36:46.996 INFO GetSampleName - Inflater: IntelInflater
20:36:46.996 INFO GetSampleName - GCS max retries/reopens: 20
20:36:46.997 INFO GetSampleName - Requester pays: disabled
20:36:46.997 INFO GetSampleName - Initializing engine
20:36:46.997 INFO GetSampleName - Done initializing engine
20:36:46.998 INFO ProgressMeter - Starting traversal
20:36:46.998 INFO ProgressMeter - Current Locus Elapsed Minutes Records Processed Records/Minute
20:36:46.998 INFO ProgressMeter - unmapped 0.0 0 NaN
20:36:46.998 INFO ProgressMeter - Traversal complete. Processed 0 total records in 0.0 minutes.
20:36:46.998 INFO GetSampleName - Shutting down engine
[June 12, 2025 at 8:36:46 PM UTC] org.broadinstitute.hellbender.tools.GetSampleName done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000