Class org.broadinstitute.hellbender.tools.IndexFeatureFileIntegrationTest
Tests
| Test |
Duration |
Result |
| testBCFIndex |
0.071s |
passed |
| testBedGZIndex |
0.072s |
passed |
| testBedIndex |
0.073s |
passed |
| testCompressedBCF2_2Index |
0.070s |
passed |
| testEnsemblGtfIndex |
0.229s |
passed |
| testEnsemblGtfIndexQuery[0](Chromosome:3019160-3020500, 1, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@520e0618, [Ljava.lang.String;@234cfd94, [Ljava.lang.String;@3bd9e492) |
0.006s |
passed |
| testEnsemblGtfIndexQuery[1](Chromosome:3286269-3288786, 4, [Lorg.broadinstitute.hellbender.utils.SimpleInterval;@e774bb3, [Ljava.lang.String;@7afed39b, [Ljava.lang.String;@68b4e651) |
0.003s |
passed |
| testGVCFIndex |
0.072s |
passed |
| testGVCFTreatedAsVCFIndex |
0.072s |
passed |
| testIndexBCFFileGZ |
0.072s |
passed |
| testIndexNonFeatureFileGZ |
0.071s |
passed |
| testNewGencodeLiftoverGtfFile |
0.107s |
passed |
| testSAMPileupGZIndex |
0.102s |
passed |
| testUncompressedBCF2_2Index |
0.094s |
passed |
| testVCFGZIPIndex |
0.090s |
passed |
| testVCFGZIPIndex_inferredName |
0.070s |
passed |
| testVCFGZIndex_inferredName |
0.075s |
passed |
| testVCFGZIndex_tabix |
0.077s |
passed |
| testVCFGZIndex_tabixRequires_tbi_name |
0.069s |
passed |
| testVCFGZLargeHeaderIndex_tabix |
0.097s |
passed |
| testVCFIndex |
0.070s |
passed |
| testVCFIndex_cannotWrite |
0.070s |
passed |
| testVCFIndex_inferredName |
0.068s |
passed |
| testVCFIndex_missingFile |
0.067s |
passed |
| testVCFWithNoRecords |
0.067s |
passed |
Standard error
[June 12, 2025 at 8:36:58 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:58 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:58 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:58 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:58 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:58 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:58 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:36:59 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:00 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:00 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:00 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:00 PM UTC] org.broadinstitute.hellbender.tools.IndexFeatureFile done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000