Class org.broadinstitute.hellbender.tools.copynumber.CollectReadCountsIntegrationTest
Tests
| Test |
Duration |
Result |
| testHDF5Output[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878-expected.tsv) |
0.158s |
passed |
| testIntervalExclusionPadding |
0.078s |
passed |
| testIntervalMergingRule |
0.075s |
passed |
| testIntervalPadding |
0.077s |
passed |
| testIntervalSetRule |
0.077s |
passed |
| testTSVOutput[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878.bam, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/collect-read-counts-NA12878-expected.tsv) |
0.073s |
passed |
Standard error
[June 12, 2025 at 8:37:09 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:09 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:09 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:09 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:09 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:09 PM UTC] org.broadinstitute.hellbender.tools.copynumber.CollectReadCounts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000