Class org.broadinstitute.hellbender.tools.copynumber.ModelSegmentsIntegrationTest

all > org.broadinstitute.hellbender.tools.copynumber > ModelSegmentsIntegrationTest

tests

failures

ignored

43.465s

duration

100%

successful

Tests
Standard error

Tests

Test	Duration	Result
assertThatExpectedOutputUpdateToggleIsDisabled	0s	passed
testInvalidDataModesMultipleSamples[0]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.260s	passed
testInvalidDataModesMultipleSamples[10]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.065s	passed
testInvalidDataModesMultipleSamples[11]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null)	0.066s	passed
testInvalidDataModesMultipleSamples[12]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.065s	passed
testInvalidDataModesMultipleSamples[13]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null)	0.066s	passed
testInvalidDataModesMultipleSamples[14]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.065s	passed
testInvalidDataModesMultipleSamples[1]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null)	0.221s	passed
testInvalidDataModesMultipleSamples[2]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-with-missing-intervals.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null)	0.079s	passed
testInvalidDataModesMultipleSamples[3]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.283s	passed
testInvalidDataModesMultipleSamples[4]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null)	0.231s	passed
testInvalidDataModesMultipleSamples[5](null, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-with-missing-sites.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null)	0.198s	passed
testInvalidDataModesMultipleSamples[6]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv)	0.281s	passed
testInvalidDataModesMultipleSamples[7](null, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv)	0.288s	passed
testInvalidDataModesMultipleSamples[8]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.189s	passed
testInvalidDataModesMultipleSamples[9]([/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null)	0.191s	passed
testInvalidDataModesSingleSample[0](/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv)	0.219s	passed
testInvalidDataModesSingleSample[1](null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-with-missing-sites.allelicCounts.tsv)	0.190s	passed
testInvalidDataModesSingleSample[2](/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.130s	passed
testInvalidDataModesSingleSample[3](/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null)	0.125s	passed
testInvalidDataModesSingleSample[4](/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.065s	passed
testInvalidDataModesSingleSample[5](null, null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	0.066s	passed
testMetadata	0.339s	passed
testValidDataModesMultipleSamples[0](multiple-sample-cr-ac-nac, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	5.650s	passed
testValidDataModesMultipleSamples[1](multiple-sample-cr-ac, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null)	5.398s	passed
testValidDataModesMultipleSamples[2](multiple-sample-ac-nac, null, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	4.452s	passed
testValidDataModesMultipleSamples[3](multiple-sample-cr, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv], null, null)	1.345s	passed
testValidDataModesMultipleSamples[4](multiple-sample-ac, null, [/home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-2-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv], null)	5.350s	passed
testValidDataModesSingleSample[0](single-sample-cr-ac-nac, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	4.126s	passed
testValidDataModesSingleSample[1](single-sample-cr-ac, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null)	4.212s	passed
testValidDataModesSingleSample[2](single-sample-ac-nac, null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-normal-allelic-counts-SM-74NEG-v1-chr20.allelicCounts.tsv)	3.651s	passed
testValidDataModesSingleSample[3](single-sample-cr, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-denoised-copy-ratios-SM-74P4M-v1-chr20.denoisedCR.tsv, null, null)	1.092s	passed
testValidDataModesSingleSample[4](single-sample-ac, null, /home/runner/work/gatk/gatk/src/test/resources/large/org/broadinstitute/hellbender/tools/copynumber/model-segments-wes-tumor-1-allelic-counts-SM-74P4M-v1-chr20.allelicCounts.tsv, null)	4.507s	passed

Standard error

[June 12, 2025 at 8:37:48 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:48 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:48 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:49 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:37:49 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1186988032
[June 12, 2025 at 8:37:49 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:49 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:50 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:51 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:51 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:51 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:51 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:51 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:51 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=566231040
[June 12, 2025 at 8:37:53 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=545259520
[June 12, 2025 at 8:37:57 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=671088640
[June 12, 2025 at 8:37:58 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=671088640
[June 12, 2025 at 8:38:03 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=671088640
[June 12, 2025 at 8:38:03 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=671088640
[June 12, 2025 at 8:38:07 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=671088640
[June 12, 2025 at 8:38:07 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:38:08 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:38:09 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:38:14 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.08 minutes.
Runtime.totalMemory()=629145600
[June 12, 2025 at 8:38:18 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=1247805440
[June 12, 2025 at 8:38:22 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=1247805440
[June 12, 2025 at 8:38:26 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=1247805440
[June 12, 2025 at 8:38:27 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1247805440
[June 12, 2025 at 8:38:31 PM UTC] org.broadinstitute.hellbender.tools.copynumber.ModelSegments done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=1247805440