Class org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervalsIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| singleFileTest | 0.074s | passed |
| testCommandLine[0](10000, 0, [20:103000-120000 + ., 20:100200-101900 + .], [20:100200-101900 + ., 20:103000-112999 + ., 20:113000-120000 + .]) | 0.071s | passed |
| testCommandLine[1](0, 0, [20:103000-120000 + ., 20:100200-101900 + .], [20:100200-101900 + ., 20:103000-120000 + .]) | 0.072s | passed |
| testCommandLine[2](10000, 500, [20:103001-120000 + ., 20:100201-102100 + .], [20:99701-102550 + ., 20:102551-112550 + ., 20:112551-120500 + .]) | 0.071s | passed |
| testCommandLine[3](100000, 5000, [20:3000-200000 + ., 20:62935000-63025520 + .], [20:1-100000 + ., 20:100001-200000 + ., 20:200001-205000 + ., 20:62930000-63025520 + .]) | 0.072s | passed |
| testCommandLine[4](60000, 0, [20:1-120000 + .], [20:60001-120000 + .]) | 0.070s | passed |
| testCommandLine[5](10000000, 500, [20:1-63025520 + .], [20:1-10000000 + ., 20:10000001-20000000 + ., 20:20000001-30000000 + ., 20:30000001-40000000 + ., 20:40000001-50000000 + ., 20:50000001-60000000 + ., 20:60000001-63025520 + .]) | 0.129s | passed |
| testCommandLine[6](10000000, 500, [], [20:1-10000000 + ., 20:10000001-20000000 + ., 20:20000001-30000000 + ., 20:30000001-40000000 + ., 20:40000001-50000000 + ., 20:50000001-60000000 + ., 20:60000001-63025520 + ., 21:1-10000000 + ., 21:10000001-20000000 + ., 21:20000001-30000000 + ., 21:30000001-40000000 + ., 21:40000001-48129895 + .]) | 0.341s | passed |
| testIntervalExclusionPadding | 0.068s | passed |
| testIntervalMergingRule | 0.070s | passed |
| testIntervalPadding | 0.069s | passed |
| testIntervalSetRule | 0.069s | passed |
Standard error
[June 12, 2025 at 8:38:31 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:32 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:33 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440 [June 12, 2025 at 8:38:33 PM UTC] org.broadinstitute.hellbender.tools.copynumber.PreprocessIntervals done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=1247805440