Class org.broadinstitute.hellbender.tools.funcotator.FuncotateSegmentsIntegrationTest

all > org.broadinstitute.hellbender.tools.funcotator > FuncotateSegmentsIntegrationTest
6

tests
0

failures
0

ignored
13.622s

duration
100%

successful

Tests

Test Duration Result
testEmptyGatkCalledSegmentFile 0.171s passed
testGatkCalledSegmentFile 1.327s passed
testHg38CalledCopyRatioSegmentsGatkFile 3.197s passed
testModelSegmentsGatkFile 8.726s passed
testSimpleMultipleGenesOverlap[0]([3:2000000-2500000, 3:3000000-3500000, 3:3500001-3900000], [CNTN4,CNTN4-AS2, CNTN4,CNTN4-AS1, ], [, CNTN4, ], [CNTN4, , ], [, , ], [, , ], [0, -, +], [0.037099, 0.001748, 0.501748], [2000, 3000, 4000], [SAMPLE1, SAMPLE1, SAMPLE1]) 0.108s passed
testSimpleNoOverlap 0.093s passed

Standard error

[June 12, 2025 at 8:41:42 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2063597568
[June 12, 2025 at 8:41:44 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2063597568
[June 12, 2025 at 8:41:47 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=2063597568
[June 12, 2025 at 8:41:56 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.14 minutes.
Runtime.totalMemory()=2063597568
[June 12, 2025 at 8:41:56 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2063597568
[June 12, 2025 at 8:41:56 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2063597568