Class org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark.pipelines > CountVariantsSparkIntegrationTest
16

tests
0

failures
0

ignored
5.456s

duration
100%

successful

Tests

Test Duration Result
testCountVariantsWithIntervals[0](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, , 9594) 0.242s passed
testCountVariantsWithIntervals[10](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20 -L 21, 9594) 0.253s passed
testCountVariantsWithIntervals[11](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -XL 20, 3937) 0.240s passed
testCountVariantsWithIntervals[1](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20, 5657) 0.244s passed
testCountVariantsWithIntervals[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20:10200000-11000000, 933) 0.238s passed
testCountVariantsWithIntervals[3](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 21, 3937) 0.249s passed
testCountVariantsWithIntervals[4](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -L 20 -L 21, 9594) 0.242s passed
testCountVariantsWithIntervals[5](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf, -XL 20, 3937) 0.232s passed
testCountVariantsWithIntervals[6](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, , 9594) 0.239s passed
testCountVariantsWithIntervals[7](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20, 5657) 0.246s passed
testCountVariantsWithIntervals[8](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 20:10200000-11000000, 933) 0.242s passed
testCountVariantsWithIntervals[9](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.20.21.vcf.blockgz.gz, -L 21, 3937) 0.323s passed
testNoNPRWhenOutputIsUnspecified 0.089s passed
test[0](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.vcf, 26) 0.093s passed
test[1](src/test/resources/org/broadinstitute/hellbender/tools/count_variants.blockgz.gz, 26) 0.096s passed
test[2](/home/runner/work/gatk/gatk/src/test/resources/large/dbsnp_138.b37.1.1-65M.vcf, 1375319) 2.188s passed

Standard output

26
26
1375319
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
9594
9594
5657
5657
933
933
3937
3937
9594
9594
3937
3937
26

Standard error

[June 12, 2025 at 8:45:21 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:21 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.04 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:23 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:24 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:24 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:24 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:24 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:25 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:25 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:25 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:25 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:26 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896
[June 12, 2025 at 8:45:26 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.CountVariantsSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1254096896