Class org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModelIntegrationTest
Tests
| Test |
Duration |
Result |
| testFewSites |
1.260s |
passed |
| testOnRealBam[0](1) |
17.536s |
passed |
| testOnRealBam[1](5) |
17.868s |
passed |
| testTwoSamples |
0.292s |
passed |
Standard error
[June 12, 2025 at 8:53:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:16 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.26 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:33 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:33 PM UTC] org.broadinstitute.hellbender.tools.walkers.SplitIntervals done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:33 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:33 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:33 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:33 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:33 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:35 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:50 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.Mutect2 done. Elapsed time: 0.26 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:50 PM UTC] org.broadinstitute.hellbender.tools.walkers.mutect.filtering.FilterMutectCalls done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:51 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.CollectF1R2Counts done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:51 PM UTC] org.broadinstitute.hellbender.tools.walkers.readorientation.LearnReadOrientationModel done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864