Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.256s |
passed |
| testASEReadCounterImproperPairs |
3.098s |
passed |
| testASEReadCounterMinDepth70 |
0.191s |
passed |
| testASEReadCounterMultipleContexts |
0.124s |
passed |
| testASEReadCounterNonRefAllele |
0.125s |
passed |
| testASEReadCounterWarnings |
0.193s |
passed |
| testASEReadCounterWithCountOverlaps |
0.190s |
passed |
| testASEReadCounterWithCountReads |
0.189s |
passed |
| testASEReadCounterWithHighMQ |
0.193s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.195s |
passed |
| testASEReadCounterWithLowMQ |
0.188s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.195s |
passed |
Standard output
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[20:53:53] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[20:53:53] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[20:53:56] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[20:53:57] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[20:53:57] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[20:53:57] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[20:53:58] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[20:53:58] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[20:53:58] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[June 12, 2025 at 8:53:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:56 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.05 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:53:58 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1902116864