Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
13.748s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 7.071s passed
testCompareReadStrands[1](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, CDS, true) 2.006s passed
testConsistentWithPast[0](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.844s passed
testConsistentWithPast[1](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.823s passed
testConsistentWithPast[2](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 1.020s passed
testConsistentWithPast[3](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 0.805s passed
testConsistentWithPast[4](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.225s passed
testConsistentWithPast[5](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.478s passed
testConsistentWithPast[6](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.265s passed
testConsistentWithPast[7](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.211s passed

Standard error

[June 12, 2025 at 8:53:59 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:54:00 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:54:01 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:54:02 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:54:02 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1902116864
[June 12, 2025 at 8:54:03 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2256535552
[June 12, 2025 at 8:54:04 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2256535552
[June 12, 2025 at 8:54:05 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2722103296
[June 12, 2025 at 8:54:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2722103296
[June 12, 2025 at 8:54:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2722103296
[June 12, 2025 at 8:54:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2722103296
[June 12, 2025 at 8:54:06 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:07 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:08 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:09 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:10 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2912944128
[June 12, 2025 at 8:54:11 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3217031168
[June 12, 2025 at 8:54:12 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3217031168
[June 12, 2025 at 8:54:12 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=3217031168