Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
11.719s |
passed |
| testSplitsFixNDN |
0.079s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.656s |
passed |
| testSplitsTargetRegionFunctionality |
0.193s |
passed |
| testSplitsWithOverhangs |
0.388s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.355s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.351s |
passed |
| testSplitsWithOverhangsNotClipping |
0.353s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.375s |
passed |
Standard output
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[20:54:24] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[20:54:24] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[20:54:25] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[20:54:26] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[20:54:26] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[20:54:26] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[20:54:27] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
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[20:54:27] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[June 12, 2025 at 8:54:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.19 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:54:24 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:54:25 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.02 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:54:26 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:54:26 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:54:26 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:54:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[June 12, 2025 at 8:54:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=650117120
[June 12, 2025 at 8:54:27 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=650117120