Class org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariantsIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.variantutils > SelectVariantsIntegrationTest
88

tests
0

failures
0

ignored
6.523s

duration
100%

successful

Tests

Test Duration Result
testAlleleTrimming 0.072s passed
testCombineInfoAndGenotypeJexl 0.075s passed
testComplexSelection 0.073s passed
testComplexSelectionWithNonExistingSamples 0.071s passed
testConcordance 0.073s passed
testDiscordance 0.072s passed
testDropAnnotations[0](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894, testSelectVariants_DropAnnotations.vcf, standard) 0.073s passed
testDropAnnotations[1](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -DA NotAnAnnotation -DGA AlsoNotAnAnnotation, testSelectVariants_DropAnnotations.vcf, unused_annotations) 0.073s passed
testDropAnnotations[2](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'FisherStrand > 10.0', testSelectVariants_DropAnnotationsSelectFisherStrand.vcf, select_on_dropped_annotation) 0.072s passed
testDropAnnotations[3](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'RMSMAPQ > 175.0', testSelectVariants_DropAnnotationsSelectRMSMAPQ.vcf, select_on_kept_annotation) 0.071s passed
testDropAnnotations[4](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'vc.getGenotype("NA11894").getExtendedAttribute("RD")>6', testSelectVariants_DropAnnotationsSelectRD.vcf, select_on_dropped_genotype_annotation) 0.075s passed
testDropAnnotations[5](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'vc.getGenotype("NA11894").getGQ()==1', testSelectVariants_DropAnnotationsSelectGQ.vcf, select_on_kept_genotype_annotation) 0.072s passed
testEmptyVcfException 0.067s passed
testExcludeSelectionIDFromFile 0.072s passed
testExcludeSelectionIDLiteral 0.069s passed
testExcludeSelectionType 0.069s passed
testExpressionSelection 0.071s passed
testFORMATFieldGivenToSelect 0.072s passed
testFileWithoutInfoLineInHeader 0.071s passed
testFileWithoutInfoLineInHeaderWithOverride 0.069s passed
testHaploid 0.074s passed
testINFOFieldGivenToSelectGenotype 0.079s passed
testInvalidJexl 0.072s passed
testInvertJexlSelection 0.072s passed
testInvertMendelianViolationSelection 0.078s passed
testInvertSelection 0.069s passed
testJEXLFilterFirst 0.142s passed
testJexlDirectlyAccessGenotype 0.072s passed
testJexlGenotypeFilter 0.072s passed
testKeepOriginalAC 0.068s passed
testKeepOriginalACAndENV 0.070s passed
testKeepOriginalDP 0.078s passed
testKeepSelectionIDFromFile 0.069s passed
testKeepSelectionIDLiteral 0.067s passed
testLogicalAndOrInJexl 0.071s passed
testManyAllelicWithoutPLsDoesntFreeze 0.078s passed
testMaxFilteredGenotypesSelection 0.070s passed
testMaxFractionFilteredGenotypesSelection 0.068s passed
testMaxIndelLengthSelection 0.069s passed
testMaxNoCall0_25 0.069s passed
testMaxNoCall0_5 0.069s passed
testMaxNoCall1 0.069s passed
testMaxNoCall2 0.069s passed
testMendelianViolationSelection 0.076s passed
testMinFilteredGenotypesSelection 0.071s passed
testMinFractionFilteredGenotypesSelection 0.070s passed
testMinIndelLengthSelection 0.069s passed
testMissingVcfException 0.068s passed
testMultiAllelicAnnotationOrdering 0.073s passed
testMultipleINFOJexls 0.074s passed
testMultipleRecordsAtOnePosition 0.070s passed
testNoGTs 0.070s passed
testNonExistentSampleFile 0.066s passed
testNonExistingFieldSelection 0.072s passed
testNotFileVcfException 0.068s passed
testOutputOnlyStartingInInterval 0.074s passed
testRemoveMLE 0.071s passed
testRemoveSingleSpanDelAllele 0.073s passed
testRemoveSingleSpanDelAlleleExNonVar 0.073s passed
testRemoveSingleSpanDelAlleleNoSpanDel 0.073s passed
testRepeatedLineSelectionAndExludeFiltered 0.079s passed
testResortingFileWarning 0.074s passed
testSACDiploid 0.078s passed
testSACNonDiploid 0.108s passed
testSACSimpleDiploid 0.075s passed
testSampleExclusionFromFileAndSeparateSample 0.076s passed
testSampleExclusionJustFromExpression 0.072s passed
testSampleExclusionJustFromFile 0.073s passed
testSampleExclusionJustFromNegationExpression 0.074s passed
testSampleInclusionWithNonexistingSamples 0.070s passed
testSampleSelection 0.072s passed
testSelectFromMultiAllelic 0.087s passed
testSelectRandomFraction 0.076s passed
testSetFilteredGtoNocall 0.073s passed
testSetFilteredGtoNocallUpdateInfo 0.073s passed
testTetraDiploid 0.075s passed
testTetraploid 0.074s passed
testUntrimmedVariants 0.071s passed
testUntrimmedVariantsWithSetFilteredGtToNocall 0.069s passed
testUnusedAlleleTrimming[0](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/forHardLeftAlignVariantsTest.vcf, --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleHardLeftTrim.vcf) 0.069s passed
testUnusedAlleleTrimming[1](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/forHardLeftAlignVariantsTest.vcf, null, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleHardLeft.vcf) 0.068s passed
testUnusedAlleleTrimming[2](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCT.vcf) 0.071s passed
testUnusedAlleleTrimming[3](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTEnv.vcf) 0.070s passed
testUnusedAlleleTrimming[4](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTTrim.vcf) 0.079s passed
testUnusedAlleleTrimming[5](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTTrimAltEnv.vcf) 0.077s passed
testUseCorrectDPInJexl 0.144s passed
testVariantTypeSelection 0.069s passed
testVariantTypeSelectionForGVCF 0.070s passed

Standard output

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[20:56:31] Executing test SelectVariantsIntegrationTest:testAlleleTrimming
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[20:56:31] Executing test SelectVariantsIntegrationTest:testComplexSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:31] Executing test SelectVariantsIntegrationTest:testComplexSelectionWithNonExistingSamples--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:31] Executing test SelectVariantsIntegrationTest:testConcordance--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:31] Executing test SelectVariantsIntegrationTest:testDiscordance--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--standard
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[20:56:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--unused_annotations
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[20:56:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_dropped_annotation
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[20:56:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_kept_annotation
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[20:56:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_dropped_genotype_annotation
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[20:56:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_kept_genotype_annotation
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[20:56:32] Executing test SelectVariantsIntegrationTest:testEmptyVcfException--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/reallyEmpty.vcf
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[20:56:32] Executing test SelectVariantsIntegrationTest:testExcludeSelectionIDFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[20:56:32] Executing test SelectVariantsIntegrationTest:testExcludeSelectionIDLiteral--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[20:56:32] Executing test SelectVariantsIntegrationTest:testExcludeSelectionType--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[20:56:32] Executing test SelectVariantsIntegrationTest:testSimpleExpressionSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteringDepthInFormat.vcf
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[20:56:32] Executing test SelectVariantsIntegrationTest:testSelectVariants_FileWithoutInfoLineInHeader
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[20:56:32] Executing test SelectVariantsIntegrationTest:testSelectVariants_FileWithoutInfoLineInHeaderWithOverride
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[20:56:32] Executing test SelectVariantsIntegrationTest:testHaploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/haploid-multisample.vcf
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[20:56:32] Executing test SelectVariantsIntegrationTest:InvalidJexl
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[20:56:32] Executing test SelectVariantsIntegrationTest:testInvertJexlSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:32] Executing test SelectVariantsIntegrationTest:testInvertMendelianViolationSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[20:56:32] Executing test SelectVariantsIntegrationTest:testInvertSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:33] Executing test SelectVariantsIntegrationTest:testKeepOriginalAC--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.loseAlleleInSelection.vcf
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[20:56:33] Executing test SelectVariantsIntegrationTest:testKeepOriginalACAndENV--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.loseAlleleInSelection.vcf
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[20:56:33] Executing test SelectVariantsIntegrationTest:testKeepOriginalDP--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[20:56:33] Executing test SelectVariantsIntegrationTest:testKeepSelectionIDFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[20:56:33] Executing test SelectVariantsIntegrationTest:testKeepSelectionIDLiteral--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[20:56:33] Executing test SelectVariantsIntegrationTest:testMaxFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[20:56:33] Executing test SelectVariantsIntegrationTest:testMaxFractionFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[20:56:33] Executing test SelectVariantsIntegrationTest:testMaxIndelLengthSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMaxNoCall0_25--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMaxNoCall0_5--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMaxNoCall1--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMaxNoCall2--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMendelianViolationSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMinFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMinFractionFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMinIndelLengthSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMissingVcfException--test.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:test multi allelic annotation ordering --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testMultipleRecordsAtOnePosition--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/selectVariants.onePosition.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testNoGTs--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcf4.1.example.vcf
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[20:56:34] Executing test SelectVariantsIntegrationTest:testNonExistentSampleFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:testNonExistingSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:testNotFileVcfException--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/
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[20:56:35] Executing test SelectVariantsIntegrationTest:test that variant interval output filter mode is applied
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[20:56:35] Executing test SelectVariantsIntegrationTest:testRemoveMLE--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.withMLE.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:test removes variant line where '*' is only ALT allele --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:test will not remove variant line where '*' is only ALT allele because --exclude-non-variants not called --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:test encounter no instance of '*' as only ALT allele and ensure line is removed when only monomorphic allele existssrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:testRepeatedLineSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/test.dup.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:testSACDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/diploid-multisample-sac.g.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:testSACNonDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetraploid-multisample-sac.g.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:testSACSimpleDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/261_S01_raw_variants_gvcf.vcf
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[20:56:35] Executing test SelectVariantsIntegrationTest:testSampleExclusionFromFileAndSeparateSample--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromExpression--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromRegexExpression--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testSampleInclusionWithNonexistingSamples--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testSampleSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:test select from multi allelic with exclude-non-variants --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic.bi-allelicInGIH.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testSetFilteredGtoNocall--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testSetFilteredGtoNocallUpdateInfo--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/selectVariantsInfoField.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testTetraDiploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetra-diploid.vcf
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[20:56:36] Executing test SelectVariantsIntegrationTest:testTetraploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetraploid-multisample.vcf
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[20:56:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (forHardLeftAlignVariantsTest.vcf,--remove-unused-alternates)
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[20:56:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (forHardLeftAlignVariantsTest.vcf,(none))
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[20:56:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT)
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[20:56:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants)
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[20:56:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --remove-unused-alternates)
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[20:56:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants --remove-unused-alternates)
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[20:56:37] Executing test SelectVariantsIntegrationTest:testVariantTypeSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[20:56:37] Executing test SelectVariantsIntegrationTest:testVariantTypeSelectionForGVCF--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/gvcfExample.g.vcf

Standard error

[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192
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Runtime.totalMemory()=1616904192