Class org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSRIntegrationTest
Tests
| Test |
Duration |
Result |
| testApplyIndelRecalibration |
0.577s |
passed |
| testApplySNPRecalibration |
1.831s |
passed |
| testApplyVQSRAlleleSpecificINDELmode |
0.086s |
passed |
| testApplyVQSRAlleleSpecificINDELmodeGZIPIndex |
0.124s |
passed |
| testApplyVQSRAlleleSpecificSNPmode |
0.081s |
passed |
| testApplyVQSRSnpAndIndelTogether |
0.069s |
passed |
| testApplyVQSRSnpAndIndelTogetherExcludeFiltered |
0.069s |
passed |
Standard output
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[20:56:43] Executing test ApplyVQSRIntegrationTest:testApplyVQSRIndel
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[20:56:44] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSNP
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[20:56:45] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmode
--------------------------------------------------------------------------------
[20:56:45] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificINDELmodeGZIP
--------------------------------------------------------------------------------
[20:56:46] Executing test ApplyVQSRIntegrationTest:testApplyVQSRAlleleSpecificSNPmode
--------------------------------------------------------------------------------
[20:56:46] Executing test ApplyVQSRIntegrationTest:testApplyVQSRSnpAndIndelTogether
Standard error
[June 12, 2025 at 8:56:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:45 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:45 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192
[June 12, 2025 at 8:56:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.vqsr.ApplyVQSR done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1616904192