Class org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest

all > org.broadinstitute.hellbender.engine > LocusWalkerByIntervalUnitTest
13

tests
0

failures
0

ignored
0.156s

duration
100%

successful

Tests

Test Duration Result
testOverlappingBasesCoverageInformation[0]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@5d5ad1e2, [I@2fc378cd) 0.023s passed
testOverlappingBasesCoverageInformation[10]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@7de4bd8f, [I@193e65d5) 0.009s passed
testOverlappingBasesCoverageInformation[11]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@1512a767, [I@7c2b858d) 0.014s passed
testOverlappingBasesCoverageInformation[12]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@18cb7c6, [I@6608072d) 0.012s passed
testOverlappingBasesCoverageInformation[1]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@7119d1da, [I@3057728e) 0.010s passed
testOverlappingBasesCoverageInformation[2]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@1f3c3291, [I@1a0c384d) 0.010s passed
testOverlappingBasesCoverageInformation[3]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@75ad7531, [I@4d619aa0) 0.011s passed
testOverlappingBasesCoverageInformation[4]([20:1000-2000, 20:2001-3000], [Lhtsjdk.samtools.util.Locatable;@71c45428, [I@28516b2d) 0.011s passed
testOverlappingBasesCoverageInformation[5]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@6092d41, [I@a263df9) 0.010s passed
testOverlappingBasesCoverageInformation[6]([20:1000-2000, 21:3001-4000], [Lhtsjdk.samtools.util.Locatable;@7217e615, [I@7614beba) 0.010s passed
testOverlappingBasesCoverageInformation[7]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@7d3a9061, [I@2a2f7a61) 0.017s passed
testOverlappingBasesCoverageInformation[8]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@1313dea8, [I@74bca236) 0.010s passed
testOverlappingBasesCoverageInformation[9]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@5eb974, [I@72f112d1) 0.009s passed

Standard error

19:48:11.494 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.494 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.494 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.494 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.494 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.494 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.494 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.494 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.495 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.495 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.495 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.495 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.495 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.495 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.495 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.495 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.495 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.497 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.497 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.497 INFO  ProgressMeter - Starting traversal
19:48:11.497 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.511 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.512 INFO  ProgressMeter -              20:1999              0.0                  1001        4004000.0
19:48:11.512 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.512 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.518 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.518 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.518 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.518 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.518 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.518 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.518 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.518 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.519 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.519 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.519 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.519 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.519 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.519 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.519 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.519 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.519 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.520 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.521 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.521 INFO  ProgressMeter - Starting traversal
19:48:11.521 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.523 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.523 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
19:48:11.523 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.523 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.528 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.528 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.528 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.528 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.528 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.529 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.529 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.529 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.529 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.529 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.529 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.529 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.529 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.529 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.529 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.529 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.529 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.531 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.531 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.531 INFO  ProgressMeter - Starting traversal
19:48:11.531 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.532 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.532 INFO  ProgressMeter -              20:1999              0.0                  1001       60060000.0
19:48:11.533 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.533 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.538 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.538 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.538 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.538 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.538 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.539 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.539 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.539 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.539 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.539 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.539 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.539 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.539 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.539 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.539 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.539 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.539 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.541 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.541 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.541 INFO  ProgressMeter - Starting traversal
19:48:11.541 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.543 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.543 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
19:48:11.544 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.544 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.549 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.549 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.549 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.549 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.549 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.549 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.549 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.549 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.550 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.550 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.550 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.550 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.550 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.550 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.550 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.550 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.550 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.551 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
19:48:11.551 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.551 INFO  ProgressMeter - Starting traversal
19:48:11.552 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.555 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.555 INFO  ProgressMeter -              20:2999              0.0                  2001       40020000.0
19:48:11.555 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
19:48:11.555 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.560 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.560 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.560 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.561 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.561 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.561 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.561 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.561 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.561 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.561 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.561 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.561 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.561 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.561 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.561 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.561 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.561 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.563 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
19:48:11.563 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.563 INFO  ProgressMeter - Starting traversal
19:48:11.563 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.566 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.566 INFO  ProgressMeter -              20:3999              0.0                  2001       40020000.0
19:48:11.566 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
19:48:11.566 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.571 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.571 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.571 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.571 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.571 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.571 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.572 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.572 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.572 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.572 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.572 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.572 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.572 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.572 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.572 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.572 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.572 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.573 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
19:48:11.573 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.574 INFO  ProgressMeter - Starting traversal
19:48:11.574 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.577 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.577 INFO  ProgressMeter -              21:3999              0.0                  2001       40020000.0
19:48:11.577 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
19:48:11.577 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.582 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.582 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.582 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.582 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.582 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.582 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.582 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.582 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.583 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.583 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.583 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.583 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.583 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.583 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.583 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.583 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.583 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.584 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
19:48:11.584 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.584 INFO  ProgressMeter - Starting traversal
19:48:11.584 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.593 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.593 INFO  ProgressMeter -              20:3999              0.0                  2001       13340000.0
19:48:11.593 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
19:48:11.593 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.598 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.598 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.598 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.598 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.598 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.598 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.598 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.598 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.599 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.599 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.599 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.599 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.599 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.599 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.599 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.599 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.599 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.600 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.600 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.601 INFO  ProgressMeter - Starting traversal
19:48:11.601 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.603 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.603 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
19:48:11.603 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.603 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.609 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.609 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.609 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.609 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.609 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.609 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.609 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.609 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.610 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.610 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.610 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.610 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.610 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.610 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.610 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.610 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.610 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.611 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.611 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.611 INFO  ProgressMeter - Starting traversal
19:48:11.611 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.613 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.613 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
19:48:11.613 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.613 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.618 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.618 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.618 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.618 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.619 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.619 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.619 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.619 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.619 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.619 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.619 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.619 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.619 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.619 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.619 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.619 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.619 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.620 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.621 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.621 INFO  ProgressMeter - Starting traversal
19:48:11.621 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.622 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.622 INFO  ProgressMeter -              20:1999              0.0                  1001       60060000.0
19:48:11.622 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.623 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.631 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.631 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.631 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.631 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.631 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.631 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.631 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.631 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.631 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.631 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.631 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.631 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.631 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.631 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.631 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.632 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.632 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.633 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.633 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.634 INFO  ProgressMeter - Starting traversal
19:48:11.634 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.636 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.636 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
19:48:11.636 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.636 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.644 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.644 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.644 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.644 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.644 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.644 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.644 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.644 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.644 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.644 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.644 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.644 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.644 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.644 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.644 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.644 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.644 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.646 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
19:48:11.646 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.646 INFO  ProgressMeter - Starting traversal
19:48:11.646 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.649 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
19:48:11.649 INFO  ProgressMeter -              20:1999              0.0                  1001       20020000.0
19:48:11.649 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
19:48:11.649 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600