Class org.broadinstitute.hellbender.engine.LocusWalkerUnitTest

2

tests

0

failures

0

ignored

0.031s

duration

100%

successful

Tests

Test Duration Result
testEmitUncoveredLoci 0.016s passed
testTransformReads 0.015s passed

Standard error

19:48:11.658 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
19:48:11.658 INFO  TestEmitUncoveredLociTool - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.658 INFO  TestEmitUncoveredLociTool - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.658 INFO  TestEmitUncoveredLociTool - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.658 INFO  TestEmitUncoveredLociTool - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.658 INFO  TestEmitUncoveredLociTool - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.658 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
19:48:11.658 INFO  TestEmitUncoveredLociTool - ------------------------------------------------------------
19:48:11.658 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.658 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.658 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.658 INFO  TestEmitUncoveredLociTool - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.658 INFO  TestEmitUncoveredLociTool - Deflater: IntelDeflater
19:48:11.658 INFO  TestEmitUncoveredLociTool - Inflater: IntelInflater
19:48:11.658 INFO  TestEmitUncoveredLociTool - GCS max retries/reopens: 20
19:48:11.658 INFO  TestEmitUncoveredLociTool - Requester pays: disabled
19:48:11.658 INFO  TestEmitUncoveredLociTool - Initializing engine
19:48:11.663 INFO  IntervalArgumentCollection - Processing 10 bp from intervals
19:48:11.663 INFO  TestEmitUncoveredLociTool - Done initializing engine
19:48:11.663 INFO  ProgressMeter - Starting traversal
19:48:11.663 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.666 INFO  TestEmitUncoveredLociTool - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 5 reads processed
19:48:11.666 INFO  ProgressMeter -             unmapped              0.0                    10         200000.0
19:48:11.666 INFO  ProgressMeter - Traversal complete. Processed 10 total loci in 0.0 minutes.
19:48:11.666 INFO  TestEmitUncoveredLociTool - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestEmitUncoveredLociTool done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
19:48:11.673 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.673 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
19:48:11.673 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
19:48:11.673 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
19:48:11.673 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
19:48:11.674 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 7:48:11 PM UTC
19:48:11.674 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.674 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
19:48:11.674 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
19:48:11.674 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
19:48:11.674 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
19:48:11.674 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
19:48:11.674 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
19:48:11.674 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
19:48:11.674 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
19:48:11.674 INFO  TestTransformedLocusWalker - Requester pays: disabled
19:48:11.674 INFO  TestTransformedLocusWalker - Initializing engine
19:48:11.677 INFO  IntervalArgumentCollection - Processing 1 bp from intervals
19:48:11.677 INFO  TestTransformedLocusWalker - Done initializing engine
19:48:11.678 INFO  ProgressMeter - Starting traversal
19:48:11.678 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
19:48:11.680 INFO  TestTransformedLocusWalker - 0 read(s) filtered by:  

19:48:11.680 INFO  ProgressMeter -             unmapped              0.0                     1          30000.0
19:48:11.680 INFO  ProgressMeter - Traversal complete. Processed 1 total loci in 0.0 minutes.
19:48:11.680 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 7:48:11 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600