Class org.broadinstitute.hellbender.tools.sv.cluster.SVClusterEngineTest

all > org.broadinstitute.hellbender.tools.sv.cluster > SVClusterEngineTest
43

tests
0

failures
0

ignored
0.898s

duration
100%

successful

Tests

Test Duration Result
testAdd 0.014s passed
testAddMaxCliqueLarge 0.060s passed
testAddVaryPositions[0](10000, 20001, 12000, 22001, 14000, 24001, SINGLE_LINKAGE, 1) 0.001s passed
testAddVaryPositions[1](10000, 20001, 12000, 22001, 14001, 24002, SINGLE_LINKAGE, 2) 0.001s passed
testAddVaryPositions[2](10000, 20001, 12001, 22002, 14002, 24003, SINGLE_LINKAGE, 3) 0s passed
testAddVaryPositions[3](10000, 20001, 11000, 21001, 12000, 22001, MAX_CLIQUE, 1) 0s passed
testAddVaryPositions[4](10000, 20001, 12000, 22001, 14000, 24001, MAX_CLIQUE, 2) 0s passed
testAddVaryPositions[5](10000, 20001, 12001, 22002, 14002, 24003, MAX_CLIQUE, 3) 0s passed
testCollapser 0.006s passed
testGetCarrierSamplesBiallelic[0](0, null, null, [I@7b159d1b, [Ljava.lang.String;@247246ea) 0s passed
testGetCarrierSamplesBiallelic[10](2, N*, <DEL>, [I@2eab279, [Ljava.lang.String;@87f8146) 0s passed
testGetCarrierSamplesBiallelic[11](2, N*, <DEL>, [I@50626d22, [Ljava.lang.String;@7cc742d) 0s passed
testGetCarrierSamplesBiallelic[12](2, N*, <DEL>, [I@22bf2a0d, [Ljava.lang.String;@61774805) 0s passed
testGetCarrierSamplesBiallelic[13](2, N*, <DUP>, [I@1b2c513e, [Ljava.lang.String;@4098ef14) 0s passed
testGetCarrierSamplesBiallelic[14](2, N*, <DUP>, [I@6f5690f3, [Ljava.lang.String;@160a8986) 0s passed
testGetCarrierSamplesBiallelic[15](3, N*, <DEL>, [I@2f24e1f3, [Ljava.lang.String;@74ae2dec) 0.001s passed
testGetCarrierSamplesBiallelic[16](3, N*, <DEL>, [I@43f81c74, [Ljava.lang.String;@23d030b1) 0s passed
testGetCarrierSamplesBiallelic[1](0, null, <DEL>, [I@10ba757f, [Ljava.lang.String;@711cd6f9) 0.001s passed
testGetCarrierSamplesBiallelic[2](0, N*, null, [I@7307e418, [Ljava.lang.String;@30d5668a) 0s passed
testGetCarrierSamplesBiallelic[3](0, ., null, [I@25297d52, [Ljava.lang.String;@69c27acb) 0s passed
testGetCarrierSamplesBiallelic[4](0, ., <DEL>, [I@1b131102, [Ljava.lang.String;@75be3cdf) 0s passed
testGetCarrierSamplesBiallelic[5](0, N*, <DEL>, [I@38dde7ec, [Ljava.lang.String;@3bc57af4) 0.001s passed
testGetCarrierSamplesBiallelic[6](0, N*, <DEL>, [I@30628ef9, [Ljava.lang.String;@6757ed9e) 0s passed
testGetCarrierSamplesBiallelic[7](1, N*, <DEL>, [I@7b0eb7e, [Ljava.lang.String;@2381a837) 0s passed
testGetCarrierSamplesBiallelic[8](1, N*, <DEL>, [I@2523730b, [Ljava.lang.String;@25c887ca) 0.001s passed
testGetCarrierSamplesBiallelic[9](2, N*, <DEL>, [I@647dcc5e, [Ljava.lang.String;@5af850f1) 0s passed
testLargeRandom 0.804s passed
testLinkage 0s passed
testSampleOverlap[0]([Ljava.lang.String;@45682e3e, [Ljava.lang.String;@6c8a806c, 0, true) 0.001s passed
testSampleOverlap[10]([Ljava.lang.String;@3c0a4c8b, [Ljava.lang.String;@5f27d271, 1, false) 0.001s passed
testSampleOverlap[11]([Ljava.lang.String;@1b7123e5, [Ljava.lang.String;@75715a14, 1, true) 0.001s passed
testSampleOverlap[12]([Ljava.lang.String;@1a9b9095, [Ljava.lang.String;@867e628, 0.1, false) 0s passed
testSampleOverlap[13]([Ljava.lang.String;@4678e08e, [Ljava.lang.String;@21dfec, 0.5, true) 0.001s passed
testSampleOverlap[14]([Ljava.lang.String;@da51aa8, [Ljava.lang.String;@cd8e702, 1, false) 0s passed
testSampleOverlap[1]([Ljava.lang.String;@664c6bbc, [Ljava.lang.String;@442545ab, 1, true) 0.001s passed
testSampleOverlap[2]([Ljava.lang.String;@629bee3b, [Ljava.lang.String;@678f685f, 0, true) 0s passed
testSampleOverlap[3]([Ljava.lang.String;@3a3740a5, [Ljava.lang.String;@7e09bee, 0.1, false) 0s passed
testSampleOverlap[4]([Ljava.lang.String;@59929512, [Ljava.lang.String;@5920c4ed, 1, true) 0.001s passed
testSampleOverlap[5]([Ljava.lang.String;@4f8eb97c, [Ljava.lang.String;@2799f9a, 0, true) 0s passed
testSampleOverlap[6]([Ljava.lang.String;@67d90687, [Ljava.lang.String;@5d260659, 0, true) 0s passed
testSampleOverlap[7]([Ljava.lang.String;@47bc4445, [Ljava.lang.String;@687e9f0b, 0.5, true) 0s passed
testSampleOverlap[8]([Ljava.lang.String;@78ae9b9c, [Ljava.lang.String;@5d9576a0, 0.5, true) 0.001s passed
testSampleOverlap[9]([Ljava.lang.String;@7ef3b7ac, [Ljava.lang.String;@720da195, 0.5, false) 0.001s passed

Standard error

19:56:47.999 DEBUG ExecutorMetricsPoller - removing (26, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (0, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (27, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (43, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (40, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (24, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (36, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (12, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (41, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (39, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (16, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (38, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (46, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (22, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (44, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (23, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (37, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (32, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (5, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (45, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (28, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (35, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (11, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (13, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (1, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (21, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (15, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (33, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (17, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (6, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (4, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (2, 0) from stageTCMP
19:56:47.999 DEBUG ExecutorMetricsPoller - removing (10, 0) from stageTCMP