| Test |
Duration |
Result |
| testCreate[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp17821241450536134723.tar.gz, true, MODERATE) |
0.002s |
passed |
| testCreate[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp26169177109993033867.fasta, false, MODERATE) |
0s |
passed |
| testCreate[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp37317857488989059404.vcf, true, MINIMAL) |
0s |
passed |
| testCreate[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp414440194625148244106.fasta, false, MINIMAL) |
0.001s |
passed |
| testCreate[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp54250297358216188116.vcf, null, MINIMAL) |
0s |
passed |
| testCreate[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp68065843510574881013.xsv, false, null) |
0s |
passed |
| testCreate[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp712732117469133504476.vcf, null, null) |
0.001s |
passed |
| testGetDest[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp5952608949516901500.tar.gz, true, MODERATE) |
0s |
passed |
| testGetDest[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp26510867292823536499.fasta, false, MODERATE) |
0s |
passed |
| testGetDest[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp33544386049135036529.vcf, true, MINIMAL) |
0.001s |
passed |
| testGetDest[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp414489202625568817781.fasta, false, MINIMAL) |
0s |
passed |
| testGetDest[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp55678679693225904780.vcf, null, MINIMAL) |
0s |
passed |
| testGetDest[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp67025605137450913222.xsv, false, null) |
0.001s |
passed |
| testGetDest[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp75391253568024442633.vcf, null, null) |
0s |
passed |
| testGetSource[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp10566603048912423751.tar.gz, true, MODERATE) |
0s |
passed |
| testGetSource[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp2835064644753674543.fasta, false, MODERATE) |
0.001s |
passed |
| testGetSource[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp310375368628631700051.vcf, true, MINIMAL) |
0s |
passed |
| testGetSource[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp41225273430693546970.fasta, false, MINIMAL) |
0s |
passed |
| testGetSource[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp53176523878973201865.vcf, null, MINIMAL) |
0.001s |
passed |
| testGetSource[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp63928931484282135693.xsv, false, null) |
0s |
passed |
| testGetSource[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp716825835974109042405.vcf, null, null) |
0s |
passed |
| testIsDoLogProgress[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp11166658245407722318.tar.gz, true, MODERATE) |
0s |
passed |
| testIsDoLogProgress[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp215657966265820294314.fasta, false, MODERATE) |
0.001s |
passed |
| testIsDoLogProgress[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp32120883682582762915.vcf, true, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp413400463701067569509.fasta, false, MINIMAL) |
0s |
passed |
| testIsDoLogProgress[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp59235803835740977418.vcf, null, MINIMAL) |
0.001s |
passed |
| testIsDoLogProgress[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp68033004877588978724.xsv, false, null) |
0s |
passed |
| testIsDoLogProgress[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp72433829475219745300.vcf, null, null) |
0s |
passed |
| testIsOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp10183743982609711015.tar.gz, true, MODERATE) |
0.001s |
passed |
| testIsOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp25322551611930449425.fasta, false, MODERATE) |
0s |
passed |
| testIsOverwriteExisting[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp35667797375246447999.vcf, true, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp413213998922199340593.fasta, false, MINIMAL) |
0.001s |
passed |
| testIsOverwriteExisting[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp510865441963672638081.vcf, null, MINIMAL) |
0s |
passed |
| testIsOverwriteExisting[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp614230116659735089166.xsv, false, null) |
0s |
passed |
| testIsOverwriteExisting[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp78540128382813726213.vcf, null, null) |
0.001s |
passed |
| testSetOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp1247503290661920622.tar.gz, false, MODERATE, false) |
0s |
passed |
| testSetOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp8410573093680854758.tar.gz, true, MODERATE, true) |
0s |
passed |
| testSetVerbosity[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp17828281649637385327.tar.gz, true, MODERATE, MODERATE) |
0.001s |
passed |
| testSetVerbosity[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp4179587381075446361.tar.gz, true, MINIMAL, MINIMAL) |
0s |
passed |
| testSetVerbosity[2](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp9493862938391550129.tar.gz, true, SILENT, SILENT) |
0s |
passed |
| testSetVerbosity[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp9973390537692372567.tar.gz, true, VERBOSE, VERBOSE) |
0.001s |
passed |
| testSetVerbosity[4](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp14417234114834031785.tar.gz, true, null, MODERATE) |
0s |
passed |