Class org.broadinstitute.hellbender.utils.samples.SampleDBUnitTest

all > org.broadinstitute.hellbender.utils.samples > SampleDBUnitTest
14

tests
0

failures
0

ignored
0.009s

duration
100%

successful

Tests

Test Duration Result
getFamilies 0.001s passed
getFamily 0.001s passed
getFamilyIDs 0.001s passed
loadAndMergeConsistentData 0.001s passed
loadDuplicateData 0s passed
loadFamilyIDs 0.001s passed
loadInconsistentData 0.001s passed
loadNonExistentFile 0s passed
loadPEDFile 0s passed
loadPEDString 0.001s passed
testAddSamplesFromSampleNames 0s passed
testGetFounderIds 0s passed
testGetTrios 0.001s passed
testGetTriosMultipleKids 0.001s passed

Standard error

20:01:06.236 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
20:01:06.238 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
20:01:06.238 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
20:01:06.239 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
20:01:06.239 WARN  PedReader - Reading PED string: "fam1 kid dad   mom   1 2" with missing fields: []
20:01:06.240 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
20:01:06.241 WARN  PedReader - Reading PED string: "fam1 kid 0   0   2 2" with missing fields: []
20:01:06.243 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2" with missing fields: []
20:01:06.245 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []
20:01:06.245 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam3 s1  d1  m1  2 2
fam2 s2  d2  m2  2 2" with missing fields: []
20:01:06.246 WARN  PedReader - Reading PED string: "fam1 kid dad mom 1 2
fam1 dad 0   0   1 1
fam1 mom 0   0   2 2
fam4 kid4 dad4 0 1 2
fam4 dad4 0   0   1 1
fam5 kid2 dad2 mom2 1 2
fam5 kid3 dad2 mom2 1 2
fam5 dad2 0   0   1 1
fam5 mom2 0   0   2 2" with missing fields: []