Class org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testConvertHeaderlessHadoopBamShardToBam | 0.004s | passed |
| testInvalidSort | 1.334s | passed |
| testPathExists | 1.864s | passed |
| testPutReadsWithSameNameInSamePartition[0](1, 1, 2, [I@5974c049) | 0.599s | passed |
| testPutReadsWithSameNameInSamePartition[10](20, 7, 5, [I@5c4993e4) | 0.053s | passed |
| testPutReadsWithSameNameInSamePartition[1](2, 2, 2, [I@2e38be4b) | 0.064s | passed |
| testPutReadsWithSameNameInSamePartition[2](3, 2, 2, [I@5cff1149) | 0.055s | passed |
| testPutReadsWithSameNameInSamePartition[3](3, 3, 2, [I@5c2ae476) | 0.054s | passed |
| testPutReadsWithSameNameInSamePartition[4](6, 2, 2, [I@33f4c8b1) | 0.049s | passed |
| testPutReadsWithSameNameInSamePartition[5](6, 3, 2, [I@462f7f23) | 0.059s | passed |
| testPutReadsWithSameNameInSamePartition[6](6, 4, 2, [I@2c53a2e7) | 0.058s | passed |
| testPutReadsWithSameNameInSamePartition[7](2, 2, 3, [I@4b9b7c75) | 0.038s | passed |
| testPutReadsWithSameNameInSamePartition[8](3, 2, 10, [I@2b369460) | 0.036s | passed |
| testPutReadsWithSameNameInSamePartition[9](6, 4, 3, [I@6d0e2d1b) | 0.044s | passed |
| testReadsMustBeQueryGroupedToFixPartitions | 0.002s | passed |
| testReadsPairsSpanningMultiplePartitions | 0.325s | passed |
| testSortCoordinateSortMatchesHtsjdk | 0.501s | passed |
| testSortQuerynameFixesPartitionBoundaries | 0.345s | passed |
| testSortQuerynameSortMatchesHtsjdk | 0.539s | passed |
| testSortUsingElementsAsKeys | 0.055s | passed |
Standard error
20:01:06.716 WARN NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable 20:01:08.301 WARN MetricsConfig - Cannot locate configuration: tried hadoop-metrics2-namenode.properties,hadoop-metrics2.properties 20:01:08.415 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:01:08.418 WARN HttpRequestLog - Jetty request log can only be enabled using Log4j 20:01:08.481 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:01:08.817 WARN MetricsLoggerTask - Metrics logging will not be async since the logger is not log4j 20:01:08.898 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:01:08.898 WARN HttpRequestLog - Jetty request log can only be enabled using Log4j 20:01:09.003 WARN DatanodeHttpServer - Got null for restCsrfPreventionFilter - will not do any filtering. 20:01:09.040 WARN MetricsLoggerTask - Metrics logging will not be async since the logger is not log4j 20:01:09.234 WARN FsDatasetImpl - dfsUsed file missing in /tmp/minicluster_storage559965255341448863/data/data2/current/BP-1977252221-10.1.0.127-1752609668023/current, will proceed with Du for space computation calculation, 20:01:09.235 WARN FsDatasetImpl - dfsUsed file missing in /tmp/minicluster_storage559965255341448863/data/data1/current/BP-1977252221-10.1.0.127-1752609668023/current, will proceed with Du for space computation calculation, 20:01:09.278 WARN DirectoryScanner - dfs.datanode.directoryscan.throttle.limit.ms.per.sec set to value above 1000 ms/sec. Assuming default value of -1 20:01:09.462 WARN IncrementalBlockReportManager - IncrementalBlockReportManager interrupted 20:01:09.462 ERROR DataNode - Command processor encountered interrupt and exit. 20:01:09.462 WARN DataNode - Ending block pool service for: Block pool BP-1977252221-10.1.0.127-1752609668023 (Datanode Uuid 046cfc8a-2015-4025-a523-e6303e4d9ac9) service to localhost/127.0.0.1:34401 20:01:09.462 WARN DataNode - Ending command processor service for: Thread[Command processor,5,main] 20:01:09.462 WARN IncrementalBlockReportManager - IncrementalBlockReportManager interrupted 20:01:09.463 WARN CachingGetSpaceUsed - Thread Interrupted waiting to refresh disk information: sleep interrupted 20:01:09.463 WARN CachingGetSpaceUsed - Thread Interrupted waiting to refresh disk information: sleep interrupted