Class org.broadinstitute.hellbender.tools.copynumber.models.AlleleFractionModellerUnitTest
Tests
Test |
Duration |
Result |
testMCMC |
4.944s |
passed |
Standard error
20:47:59.521 INFO AlleleFractionInitializer - Initializing allele-fraction model, iterating until log likelihood converges to within 0.500000...
20:47:59.569 INFO AlleleFractionInitializer - Iteration 1, model log likelihood = -62666.394911...
20:47:59.569 INFO AlleleFractionInitializer - AlleleFractionGlobalParameters{meanBias=1.193680, biasVariance=0.028378, outlierProbability=0.017314}
20:47:59.607 INFO AlleleFractionInitializer - Iteration 2, model log likelihood = -62665.700572...
20:47:59.607 INFO AlleleFractionInitializer - AlleleFractionGlobalParameters{meanBias=1.188111, biasVariance=0.032104, outlierProbability=0.021875}
20:47:59.642 INFO AlleleFractionInitializer - Iteration 3, model log likelihood = -62665.686368...
20:47:59.642 INFO AlleleFractionInitializer - AlleleFractionGlobalParameters{meanBias=1.190299, biasVariance=0.030041, outlierProbability=0.020853}
20:47:59.659 INFO GibbsSampler - Starting MCMC sampling.
20:48:00.538 INFO GibbsSampler - 25 of 150 samples generated.
20:48:01.311 INFO GibbsSampler - 50 of 150 samples generated.
20:48:02.083 INFO GibbsSampler - 75 of 150 samples generated.
20:48:02.857 INFO GibbsSampler - 100 of 150 samples generated.
20:48:03.660 INFO GibbsSampler - 125 of 150 samples generated.
20:48:04.434 INFO GibbsSampler - 150 of 150 samples generated.
20:48:04.434 INFO GibbsSampler - MCMC sampling complete.