Class org.broadinstitute.hellbender.tools.spark.pathseq.PSBuildReferenceTaxonomyUtilsTest
Tests
| Test |
Duration |
Result |
| testBuildEmptyTaxonomicTree |
0.003s |
passed |
| testBuildReferenceNameToTaxMap |
0s |
passed |
| testBuildTaxonomicTree |
0s |
passed |
| testCloseReader |
0s |
passed |
| testEmptyBuildTaxonomicTree |
0s |
passed |
| testGetFileReaderGz |
0s |
passed |
| testGetTarGzReaderBadArchivedFile |
0.001s |
passed |
| testGetTarGzReaderBadTar |
0s |
passed |
| testParseCatalog |
0.001s |
passed |
| testParseNamesFile |
0s |
passed |
| testParseNodesFile |
0s |
passed |
| testParseReferenceRecords |
0s |
passed |
| testRemoveUnusedTaxIds |
0s |
passed |
Standard error
20:54:42.078 WARN PSBuildReferenceTaxonomyUtils - The following taxonomic IDs did not have name/taxonomy information (this may happen when the catalog and taxdump files are inconsistent) : 5
20:54:42.079 WARN PSBuildReferenceTaxonomyUtils - The following taxonomic IDs did not have name/taxonomy information (this may happen when the catalog and taxdump files are inconsistent) : 5