Test |
Duration |
Result |
testAnnotationArguments |
0.032s |
passed |
testAnnotationGroupAdditive |
0.006s |
passed |
testConfigFileControlsAnnotationPackages |
1.879s |
passed |
testDanglingAnnotationArguments[0](InbreedingCoeff, --founder-id, s1) |
0.005s |
passed |
testGetAllowedValuesForDescriptorHelpGroups |
0.003s |
passed |
testGetAllowedValuesForDescriptorHelp[0]([]) |
0.005s |
passed |
testGetAllowedValuesForDescriptorHelp[1]([org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@3d57fb9e]) |
0.004s |
passed |
testGetAllowedValuesForDescriptorHelp[2]([org.broadinstitute.hellbender.tools.walkers.annotator.RMSMappingQuality@5a9051fd, org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@7614378d]) |
0.003s |
passed |
testGetAllowedValuesForDescriptorHelp[3]([org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@5f8df69, org.broadinstitute.hellbender.tools.walkers.annotator.RMSMappingQuality@1ce6a9bd]) |
0.003s |
passed |
testGetClassForPluginHelpFromReflection |
0.003s |
passed |
testGetDefaultInstances |
0.004s |
passed |
testGroupHierarchyBehavior[0]([Ljava.lang.String;@111cbcda, false, false) |
0.004s |
passed |
testGroupHierarchyBehavior[1]([Ljava.lang.String;@3d9c8c3c, true, true) |
0.004s |
passed |
testGroupHierarchyBehavior[2]([Ljava.lang.String;@3636f2a7, true, false) |
0.004s |
passed |
testGroupHierarchyBehavior[3]([Ljava.lang.String;@30b9728f, true, true) |
0.006s |
passed |
testGroupHierarchyBehavior[4]([Ljava.lang.String;@b842275, true, true) |
0.004s |
passed |
testHierarchicalAnnotationDiscovery |
0.003s |
passed |
testIncludeAllExcludeIndividual |
0.014s |
passed |
testIncludeDefaultExcludeIndividual |
0.003s |
passed |
testIncludeDefaultGroupExcludeIndividual |
0.003s |
passed |
testIncludeUserGroupExcludeIndividual |
0.004s |
passed |
testInvalidRequestedAnnotationGroups[0]([class org.broadinstitute.hellbender.tools.walkers.annotator.RMSMappingQuality]) |
0.003s |
passed |
testInvalidRequestedAnnotationGroups[1]([interface org.broadinstitute.hellbender.tools.walkers.annotator.StandardAnnotation, interface org.broadinstitute.hellbender.tools.walkers.annotator.Annotation]) |
0.003s |
passed |
testInvalidRequestedAnnotationGroups[2]([class java.lang.Object]) |
0.002s |
passed |
testInvalidToolDefaultAnnotationGroups[0]([class org.broadinstitute.hellbender.tools.walkers.annotator.RMSMappingQuality]) |
0s |
passed |
testInvalidToolDefaultAnnotationGroups[1]([interface org.broadinstitute.hellbender.tools.walkers.annotator.StandardAnnotation, interface org.broadinstitute.hellbender.tools.walkers.annotator.Annotation]) |
0s |
passed |
testInvalidToolDefaultAnnotationGroups[2]([class java.lang.Object]) |
0s |
passed |
testInvalidUserSpecifiedAnnotations[0]([-A, StandardAnnotation]) |
0.004s |
passed |
testInvalidUserSpecifiedAnnotations[1]([-A, RMSMappingQuality, -A, RMSMappingQuality]) |
0.003s |
passed |
testInvalidUserSpecifiedAnnotations[2]([-A, RMSMappingQuality, -AX, RMSMappingQuality]) |
0.003s |
passed |
testInvalidUserSpecifiedAnnotations[3]([G, StandardAnnotation, -AX, RMSMappingQuality, -AX, RMSMappingQuality]) |
0.002s |
passed |
testInvalidUserSpecifiedAnnotations[4]([-A, foo]) |
0.002s |
passed |
testInvalidUserSpecifiedAnnotations[5]([-A, VariantAnnotator]) |
0.002s |
passed |
testMultipleOptionalArguments[0]([org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testChildAnnotation@1b7a4930, org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testParentAnnotation@591a4d25], [Ljava.lang.String;@4bfe83d, true, 5, 0) |
0.002s |
passed |
testMultipleOptionalArguments[1]([org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testChildAnnotation@5d77be8e, org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testParentAnnotation@55a055cc, org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@1ab1d93d], [Ljava.lang.String;@57167ccb, true, 5, -0.3333) |
0.004s |
passed |
testMultipleOptionalArguments[2]([org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testChildAnnotation@c89e263, org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testParentAnnotation@4d5ea776, org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@5d68be4f], [Ljava.lang.String;@34eb5d01, false, 0, 0) |
0.003s |
passed |
testMultipleOptionalArguments[3]([org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testChildAnnotation@29db008c, org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testParentAnnotation@1d008e61, org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@191b44ca], [Ljava.lang.String;@5de243bb, true, 5, -0.2941) |
0.004s |
passed |
testMultipleOptionalArguments[4]([org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testChildAnnotation@67c2b55d, org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testParentAnnotation@5db04bd2, org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@6f921e32], [Ljava.lang.String;@31c5304f, false, 0, -0.3333) |
0.004s |
passed |
testMultipleOptionalArguments[5]([org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testChildAnnotation@63d66761, org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testParentAnnotation@434a8938, org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@237cd264], [Ljava.lang.String;@51cd2d2, false, 0, -0.3333) |
0.007s |
passed |
testMultipleOptionalArguments[6]([org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testChildAnnotation@195cbf5e, org.broadinstitute.hellbender.cmdline.GATKPlugin.GATKAnnotationPluginDescriptorUnitTest$testParentAnnotation@4cb82b09, org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@49665f92], [Ljava.lang.String;@b68932b, true, 5, -0.2941) |
0.004s |
passed |
testMultipleOptionalArguments[7]([org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@6c19769c], [Ljava.lang.String;@434d001d, false, 0, -0.2941) |
0.008s |
passed |
testMultipleOptionalArguments[8]([org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeff@443dae2], [Ljava.lang.String;@8f09a02, false, 0, 0) |
0.005s |
passed |
testNoAnnotations |
0.002s |
passed |
testOverridingInstancesWithGetInstance |
0s |
passed |
testPossibleDeNovoAnnotationArguments |
0.003s |
passed |
testToolDefaultAnnotationArgumentsOverridingFromCommandLine |
0.006s |
passed |
testUseAllAnnotations |
0.005s |
passed |
testUseAllAnnotationsDisableToolDefaultAnnotaiotns |
0.005s |
passed |