Class org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest
|
100%
successful |
Tests
Test | Duration | Result |
---|---|---|
testOverlappingBasesCoverageInformation[0]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@311683ea, [I@5d5ad1e2) | 0.025s | passed |
testOverlappingBasesCoverageInformation[10]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@3619ecd, [I@7de4bd8f) | 0.010s | passed |
testOverlappingBasesCoverageInformation[11]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@39a809db, [I@1512a767) | 0.011s | passed |
testOverlappingBasesCoverageInformation[12]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@6e847a7, [I@18cb7c6) | 0.010s | passed |
testOverlappingBasesCoverageInformation[1]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@4b45016d, [I@7119d1da) | 0.010s | passed |
testOverlappingBasesCoverageInformation[2]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@17cea679, [I@1f3c3291) | 0.010s | passed |
testOverlappingBasesCoverageInformation[3]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@4fd9deed, [I@75ad7531) | 0.010s | passed |
testOverlappingBasesCoverageInformation[4]([20:1000-2000, 20:2001-3000], [Lhtsjdk.samtools.util.Locatable;@43b9ef41, [I@71c45428) | 0.010s | passed |
testOverlappingBasesCoverageInformation[5]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@8c940e2, [I@6092d41) | 0.010s | passed |
testOverlappingBasesCoverageInformation[6]([20:1000-2000, 21:3001-4000], [Lhtsjdk.samtools.util.Locatable;@6ab123d0, [I@7217e615) | 0.011s | passed |
testOverlappingBasesCoverageInformation[7]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@704c3ca2, [I@7d3a9061) | 0.016s | passed |
testOverlappingBasesCoverageInformation[8]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@63604641, [I@1313dea8) | 0.010s | passed |
testOverlappingBasesCoverageInformation[9]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@492c1b1b, [I@5eb974) | 0.009s | passed |
Standard error
20:33:07.501 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.502 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.502 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.502 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.502 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.502 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.502 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.502 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.502 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.502 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.502 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.502 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.502 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.502 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.502 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.502 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.503 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.504 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.504 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.504 INFO ProgressMeter - Starting traversal 20:33:07.504 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.521 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.521 INFO ProgressMeter - 20:1999 0.0 1001 3532941.2 20:33:07.521 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.522 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.527 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.527 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.527 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.527 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.527 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.528 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.528 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.528 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.528 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.528 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.528 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.528 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.528 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.528 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.528 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.528 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.528 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.530 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.530 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.530 INFO ProgressMeter - Starting traversal 20:33:07.530 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.532 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.532 INFO ProgressMeter - 20:1999 0.0 1001 30030000.0 20:33:07.532 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.532 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.539 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.539 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.539 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.539 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.539 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.539 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.539 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.539 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.539 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.540 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.540 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.540 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.540 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.540 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.540 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.540 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.540 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.541 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.541 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.541 INFO ProgressMeter - Starting traversal 20:33:07.541 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.543 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.543 INFO ProgressMeter - 20:1999 0.0 1001 30030000.0 20:33:07.543 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.543 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.548 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.549 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.549 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.549 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.549 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.549 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.549 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.549 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.549 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.549 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.549 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.549 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.549 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.549 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.549 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.549 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.549 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.551 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.551 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.551 INFO ProgressMeter - Starting traversal 20:33:07.551 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.553 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.553 INFO ProgressMeter - 20:1999 0.0 1001 30030000.0 20:33:07.553 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.553 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.558 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.558 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.558 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.558 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.559 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.559 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.559 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.559 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.559 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.559 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.559 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.559 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.559 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.559 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.559 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.559 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.559 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.561 INFO IntervalArgumentCollection - Processing 2001 bp from intervals 20:33:07.561 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.561 INFO ProgressMeter - Starting traversal 20:33:07.561 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.564 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.564 INFO ProgressMeter - 20:2999 0.0 2001 40020000.0 20:33:07.564 INFO ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes. 20:33:07.564 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.569 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.569 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.569 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.569 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.569 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.570 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.570 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.570 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.570 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.570 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.570 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.570 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.570 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.570 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.570 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.570 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.570 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.572 INFO IntervalArgumentCollection - Processing 2001 bp from intervals 20:33:07.572 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.572 INFO ProgressMeter - Starting traversal 20:33:07.572 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.575 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.575 INFO ProgressMeter - 20:3999 0.0 2001 40020000.0 20:33:07.575 INFO ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes. 20:33:07.575 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.580 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.580 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.580 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.580 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.580 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.580 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.580 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.580 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.581 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.581 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.581 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.581 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.581 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.581 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.581 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.581 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.581 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.582 INFO IntervalArgumentCollection - Processing 2001 bp from intervals 20:33:07.582 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.582 INFO ProgressMeter - Starting traversal 20:33:07.583 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.585 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.585 INFO ProgressMeter - 21:3999 0.0 2001 60030000.0 20:33:07.586 INFO ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes. 20:33:07.586 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.590 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.590 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.591 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.591 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.591 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.591 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.591 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.591 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.591 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.591 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.591 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.591 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.591 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.591 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.591 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.591 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.591 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.592 INFO IntervalArgumentCollection - Processing 2001 bp from intervals 20:33:07.592 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.593 INFO ProgressMeter - Starting traversal 20:33:07.593 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.601 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.601 INFO ProgressMeter - 20:3999 0.0 2001 15007500.0 20:33:07.601 INFO ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes. 20:33:07.601 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.607 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.607 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.607 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.607 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.607 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.607 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.607 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.607 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.608 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.608 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.608 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.608 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.608 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.608 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.608 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.608 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.608 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.609 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.609 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.609 INFO ProgressMeter - Starting traversal 20:33:07.609 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.611 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.611 INFO ProgressMeter - 20:1999 0.0 1001 30030000.0 20:33:07.611 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.611 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.617 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.617 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.617 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.617 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.617 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.617 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.617 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.617 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.617 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.617 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.617 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.617 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.617 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.617 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.618 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.618 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.618 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.619 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.619 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.619 INFO ProgressMeter - Starting traversal 20:33:07.619 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.621 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.621 INFO ProgressMeter - 20:1999 0.0 1001 30030000.0 20:33:07.621 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.621 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.627 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.627 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.627 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.627 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.627 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.627 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.627 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.627 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.628 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.628 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.628 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.628 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.628 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.628 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.628 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.628 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.628 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.629 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.630 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.630 INFO ProgressMeter - Starting traversal 20:33:07.630 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.632 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.632 INFO ProgressMeter - 20:1999 0.0 1001 30030000.0 20:33:07.632 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.632 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.637 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.637 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.637 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.637 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.637 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.638 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.638 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.638 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.638 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.638 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.638 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.638 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.638 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.638 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.638 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.638 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.638 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.640 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.640 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.640 INFO ProgressMeter - Starting traversal 20:33:07.640 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.642 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.642 INFO ProgressMeter - 20:1999 0.0 1001 30030000.0 20:33:07.642 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.642 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600 20:33:07.649 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.649 INFO TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable 20:33:07.649 INFO TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/ 20:33:07.649 INFO TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64 20:33:07.649 INFO TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10 20:33:07.649 INFO TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC 20:33:07.649 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.649 INFO TestTransformedLocusWalker - ------------------------------------------------------------ 20:33:07.649 INFO TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2 20:33:07.650 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false 20:33:07.650 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true 20:33:07.650 INFO TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false 20:33:07.650 INFO TestTransformedLocusWalker - Deflater: IntelDeflater 20:33:07.650 INFO TestTransformedLocusWalker - Inflater: IntelInflater 20:33:07.650 INFO TestTransformedLocusWalker - GCS max retries/reopens: 20 20:33:07.650 INFO TestTransformedLocusWalker - Requester pays: disabled 20:33:07.650 INFO TestTransformedLocusWalker - Initializing engine 20:33:07.651 INFO IntervalArgumentCollection - Processing 1001 bp from intervals 20:33:07.651 INFO TestTransformedLocusWalker - Done initializing engine 20:33:07.651 INFO ProgressMeter - Starting traversal 20:33:07.651 INFO ProgressMeter - Current Locus Elapsed Minutes Loci Processed Loci/Minute 20:33:07.653 INFO TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 0 read(s) filtered by: MappedReadFilter 0 total reads filtered out of 0 reads processed 20:33:07.653 INFO ProgressMeter - 20:1999 0.0 1001 30030000.0 20:33:07.653 INFO ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes. 20:33:07.653 INFO TestTransformedLocusWalker - Shutting down engine [July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=629145600