Class org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest

13

tests

0

failures

0

ignored

0.152s

duration

100%

successful

Tests

Test Duration Result
testOverlappingBasesCoverageInformation[0]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@311683ea, [I@5d5ad1e2) 0.025s passed
testOverlappingBasesCoverageInformation[10]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@3619ecd, [I@7de4bd8f) 0.010s passed
testOverlappingBasesCoverageInformation[11]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@39a809db, [I@1512a767) 0.011s passed
testOverlappingBasesCoverageInformation[12]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@6e847a7, [I@18cb7c6) 0.010s passed
testOverlappingBasesCoverageInformation[1]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@4b45016d, [I@7119d1da) 0.010s passed
testOverlappingBasesCoverageInformation[2]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@17cea679, [I@1f3c3291) 0.010s passed
testOverlappingBasesCoverageInformation[3]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@4fd9deed, [I@75ad7531) 0.010s passed
testOverlappingBasesCoverageInformation[4]([20:1000-2000, 20:2001-3000], [Lhtsjdk.samtools.util.Locatable;@43b9ef41, [I@71c45428) 0.010s passed
testOverlappingBasesCoverageInformation[5]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@8c940e2, [I@6092d41) 0.010s passed
testOverlappingBasesCoverageInformation[6]([20:1000-2000, 21:3001-4000], [Lhtsjdk.samtools.util.Locatable;@6ab123d0, [I@7217e615) 0.011s passed
testOverlappingBasesCoverageInformation[7]([20:1000-2000, 20:3001-4000], [Lhtsjdk.samtools.util.Locatable;@704c3ca2, [I@7d3a9061) 0.016s passed
testOverlappingBasesCoverageInformation[8]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@63604641, [I@1313dea8) 0.010s passed
testOverlappingBasesCoverageInformation[9]([20:1000-2000], [Lhtsjdk.samtools.util.Locatable;@492c1b1b, [I@5eb974) 0.009s passed

Standard error

20:33:07.501 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.502 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.502 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.502 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.502 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.502 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.502 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.502 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.502 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.502 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.502 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.502 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.502 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.502 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.502 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.502 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.503 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.504 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.504 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.504 INFO  ProgressMeter - Starting traversal
20:33:07.504 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.521 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.521 INFO  ProgressMeter -              20:1999              0.0                  1001        3532941.2
20:33:07.521 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.522 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.527 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.527 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.527 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.527 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.527 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.528 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.528 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.528 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.528 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.528 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.528 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.528 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.528 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.528 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.528 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.528 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.528 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.530 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.530 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.530 INFO  ProgressMeter - Starting traversal
20:33:07.530 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.532 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.532 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
20:33:07.532 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.532 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.539 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.539 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.539 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.539 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.539 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.539 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.539 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.539 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.539 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.540 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.540 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.540 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.540 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.540 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.540 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.540 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.540 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.541 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.541 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.541 INFO  ProgressMeter - Starting traversal
20:33:07.541 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.543 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.543 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
20:33:07.543 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.543 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.548 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.549 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.549 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.549 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.549 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.549 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.549 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.549 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.549 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.549 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.549 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.549 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.549 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.549 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.549 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.549 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.549 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.551 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.551 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.551 INFO  ProgressMeter - Starting traversal
20:33:07.551 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.553 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.553 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
20:33:07.553 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.553 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.558 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.558 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.558 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.558 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.559 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.559 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.559 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.559 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.559 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.559 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.559 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.559 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.559 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.559 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.559 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.559 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.559 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.561 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
20:33:07.561 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.561 INFO  ProgressMeter - Starting traversal
20:33:07.561 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.564 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.564 INFO  ProgressMeter -              20:2999              0.0                  2001       40020000.0
20:33:07.564 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
20:33:07.564 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.569 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.569 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.569 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.569 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.569 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.570 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.570 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.570 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.570 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.570 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.570 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.570 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.570 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.570 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.570 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.570 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.570 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.572 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
20:33:07.572 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.572 INFO  ProgressMeter - Starting traversal
20:33:07.572 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.575 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.575 INFO  ProgressMeter -              20:3999              0.0                  2001       40020000.0
20:33:07.575 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
20:33:07.575 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.580 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.580 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.580 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.580 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.580 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.580 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.580 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.580 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.581 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.581 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.581 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.581 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.581 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.581 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.581 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.581 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.581 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.582 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
20:33:07.582 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.582 INFO  ProgressMeter - Starting traversal
20:33:07.583 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.585 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.585 INFO  ProgressMeter -              21:3999              0.0                  2001       60030000.0
20:33:07.586 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
20:33:07.586 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.590 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.590 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.591 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.591 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.591 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.591 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.591 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.591 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.591 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.591 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.591 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.591 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.591 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.591 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.591 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.591 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.591 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.592 INFO  IntervalArgumentCollection - Processing 2001 bp from intervals
20:33:07.592 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.593 INFO  ProgressMeter - Starting traversal
20:33:07.593 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.601 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.601 INFO  ProgressMeter -              20:3999              0.0                  2001       15007500.0
20:33:07.601 INFO  ProgressMeter - Traversal complete. Processed 2001 total loci in 0.0 minutes.
20:33:07.601 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.607 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.607 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.607 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.607 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.607 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.607 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.607 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.607 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.608 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.608 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.608 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.608 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.608 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.608 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.608 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.608 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.608 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.609 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.609 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.609 INFO  ProgressMeter - Starting traversal
20:33:07.609 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.611 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.611 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
20:33:07.611 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.611 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.617 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.617 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.617 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.617 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.617 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.617 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.617 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.617 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.617 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.617 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.617 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.617 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.617 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.617 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.618 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.618 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.618 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.619 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.619 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.619 INFO  ProgressMeter - Starting traversal
20:33:07.619 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.621 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.621 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
20:33:07.621 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.621 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.627 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.627 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.627 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.627 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.627 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.627 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.627 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.627 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.628 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.628 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.628 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.628 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.628 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.628 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.628 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.628 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.628 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.629 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.630 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.630 INFO  ProgressMeter - Starting traversal
20:33:07.630 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.632 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.632 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
20:33:07.632 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.632 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.637 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.637 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.637 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.637 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.637 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.638 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.638 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.638 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.638 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.638 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.638 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.638 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.638 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.638 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.638 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.638 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.638 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.640 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.640 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.640 INFO  ProgressMeter - Starting traversal
20:33:07.640 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.642 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.642 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
20:33:07.642 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.642 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.649 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.649 INFO  TestTransformedLocusWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.649 INFO  TestTransformedLocusWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.649 INFO  TestTransformedLocusWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.649 INFO  TestTransformedLocusWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.649 INFO  TestTransformedLocusWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.649 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.649 INFO  TestTransformedLocusWalker - ------------------------------------------------------------
20:33:07.649 INFO  TestTransformedLocusWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.650 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.650 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.650 INFO  TestTransformedLocusWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.650 INFO  TestTransformedLocusWalker - Deflater: IntelDeflater
20:33:07.650 INFO  TestTransformedLocusWalker - Inflater: IntelInflater
20:33:07.650 INFO  TestTransformedLocusWalker - GCS max retries/reopens: 20
20:33:07.650 INFO  TestTransformedLocusWalker - Requester pays: disabled
20:33:07.650 INFO  TestTransformedLocusWalker - Initializing engine
20:33:07.651 INFO  IntervalArgumentCollection - Processing 1001 bp from intervals
20:33:07.651 INFO  TestTransformedLocusWalker - Done initializing engine
20:33:07.651 INFO  ProgressMeter - Starting traversal
20:33:07.651 INFO  ProgressMeter -        Current Locus  Elapsed Minutes        Loci Processed      Loci/Minute
20:33:07.653 INFO  TestTransformedLocusWalker - 0 read(s) filtered by: WellformedReadFilter 
0 read(s) filtered by: MappedReadFilter 
0 total reads filtered out of 0 reads processed
20:33:07.653 INFO  ProgressMeter -              20:1999              0.0                  1001       30030000.0
20:33:07.653 INFO  ProgressMeter - Traversal complete. Processed 1001 total loci in 0.0 minutes.
20:33:07.653 INFO  TestTransformedLocusWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.LocusWalkerByIntervalUnitTest$TestTransformedLocusWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600