Class org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest

13

tests

0

failures

0

ignored

0.124s

duration

100%

successful

Tests

Test Duration Result
testIntervalFiltering[0](/count_reads_sorted.bam) 0.013s passed
testIntervalFiltering[1](/count_reads_sorted.cram) 0.015s passed
testPassCounts[0](0) 0.007s passed
testPassCounts[1](1) 0.005s passed
testPassCounts[2](2) 0.006s passed
testPassCounts[3](5) 0.006s passed
testPassCounts[4](25) 0.012s passed
testRejectAttemptToIndexNonIndexableInput[0](/count_reads.bam) 0.010s passed
testRejectAttemptToIndexNonIndexableInput[1](/count_reads.sam) 0.008s passed
testRejectAttemptToIndexNonIndexableInput[2](/count_reads.cram) 0.007s passed
testTwoPass[0](/count_reads.bam) 0.008s passed
testTwoPass[1](/count_reads.sam) 0.013s passed
testTwoPass[2](/count_reads.cram) 0.014s passed

Standard error

20:33:07.926 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.926 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.926 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.926 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.926 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.926 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.926 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.926 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.927 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.927 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.927 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.927 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.927 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.927 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:07.927 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:07.927 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:07.927 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:07.930 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:33:07.931 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:07.931 INFO  ProgressMeter - Starting traversal
20:33:07.931 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:07.933 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.933 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:33:07.933 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.934 INFO  ProgressMeter -             unmapped              0.0                    10         200000.0
20:33:07.934 INFO  ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
20:33:07.934 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.938 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.938 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.938 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.938 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.938 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.938 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.938 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.938 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.938 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.938 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.938 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.938 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.939 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.939 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:07.939 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:07.939 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:07.939 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:07.942 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:33:07.942 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:07.942 INFO  ProgressMeter - Starting traversal
20:33:07.942 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:07.947 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.947 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:33:07.948 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.948 INFO  ProgressMeter -             unmapped              0.0                    10         100000.0
20:33:07.948 INFO  ProgressMeter - Traversal complete. Processed 10 total reads in 0.0 minutes.
20:33:07.948 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.954 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.954 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.954 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.954 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.954 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.954 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.954 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.954 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.954 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.954 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.954 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.954 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.954 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.954 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:07.954 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:07.954 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:07.954 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:07.955 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:07.955 INFO  ProgressMeter - Starting traversal
20:33:07.955 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:07.955 INFO  ProgressMeter -             unmapped              0.0                     0              NaN
20:33:07.955 INFO  ProgressMeter - Traversal complete. Processed 0 total reads in 0.0 minutes.
20:33:07.956 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.960 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.960 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.960 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.960 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.960 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.960 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.960 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.960 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.960 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.960 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.960 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.960 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.960 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.960 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:07.960 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:07.960 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:07.960 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:07.961 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:07.961 INFO  ProgressMeter - Starting traversal
20:33:07.961 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:07.961 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.961 INFO  ProgressMeter -             unmapped              0.0                     8         Infinity
20:33:07.961 INFO  ProgressMeter - Traversal complete. Processed 8 total reads in 0.0 minutes.
20:33:07.961 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.965 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.965 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.965 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.965 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.965 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.965 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.965 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.965 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.965 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.965 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.965 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.965 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.965 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.965 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:07.965 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:07.965 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:07.965 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:07.966 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:07.966 INFO  ProgressMeter - Starting traversal
20:33:07.966 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:07.966 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.966 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:33:07.966 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.966 INFO  ProgressMeter -             unmapped              0.0                    16         Infinity
20:33:07.966 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
20:33:07.966 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.970 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.970 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.970 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.970 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.970 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.971 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.971 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.971 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.971 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.971 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.971 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.971 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.971 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.971 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:07.971 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:07.971 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:07.971 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:07.971 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:07.971 INFO  ProgressMeter - Starting traversal
20:33:07.971 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:07.972 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.972 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:33:07.972 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.972 INFO  dummyMultiplePassReadWalker - Starting traversal pass 3
20:33:07.972 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.972 INFO  dummyMultiplePassReadWalker - Starting traversal pass 4
20:33:07.973 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.973 INFO  dummyMultiplePassReadWalker - Starting traversal pass 5
20:33:07.973 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.973 INFO  ProgressMeter -             unmapped              0.0                    40        1200000.0
20:33:07.973 INFO  ProgressMeter - Traversal complete. Processed 40 total reads in 0.0 minutes.
20:33:07.973 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.978 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.978 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.978 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.978 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.978 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.978 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.978 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.978 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.979 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.979 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.979 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.979 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.979 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.979 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:07.979 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:07.979 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:07.979 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:07.979 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:07.979 INFO  ProgressMeter - Starting traversal
20:33:07.979 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:07.979 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.979 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:33:07.980 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.980 INFO  dummyMultiplePassReadWalker - Starting traversal pass 3
20:33:07.980 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.980 INFO  dummyMultiplePassReadWalker - Starting traversal pass 4
20:33:07.980 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.980 INFO  dummyMultiplePassReadWalker - Starting traversal pass 5
20:33:07.980 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.981 INFO  dummyMultiplePassReadWalker - Starting traversal pass 6
20:33:07.981 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.981 INFO  dummyMultiplePassReadWalker - Starting traversal pass 7
20:33:07.981 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.981 INFO  dummyMultiplePassReadWalker - Starting traversal pass 8
20:33:07.981 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.981 INFO  dummyMultiplePassReadWalker - Starting traversal pass 9
20:33:07.981 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.982 INFO  dummyMultiplePassReadWalker - Starting traversal pass 10
20:33:07.982 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.982 INFO  dummyMultiplePassReadWalker - Starting traversal pass 11
20:33:07.982 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.982 INFO  dummyMultiplePassReadWalker - Starting traversal pass 12
20:33:07.982 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.982 INFO  dummyMultiplePassReadWalker - Starting traversal pass 13
20:33:07.982 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.982 INFO  dummyMultiplePassReadWalker - Starting traversal pass 14
20:33:07.983 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.983 INFO  dummyMultiplePassReadWalker - Starting traversal pass 15
20:33:07.983 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.983 INFO  dummyMultiplePassReadWalker - Starting traversal pass 16
20:33:07.983 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.983 INFO  dummyMultiplePassReadWalker - Starting traversal pass 17
20:33:07.983 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.983 INFO  dummyMultiplePassReadWalker - Starting traversal pass 18
20:33:07.983 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.983 INFO  dummyMultiplePassReadWalker - Starting traversal pass 19
20:33:07.983 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.983 INFO  dummyMultiplePassReadWalker - Starting traversal pass 20
20:33:07.984 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.984 INFO  dummyMultiplePassReadWalker - Starting traversal pass 21
20:33:07.984 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.984 INFO  dummyMultiplePassReadWalker - Starting traversal pass 22
20:33:07.984 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.984 INFO  dummyMultiplePassReadWalker - Starting traversal pass 23
20:33:07.984 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.984 INFO  dummyMultiplePassReadWalker - Starting traversal pass 24
20:33:07.984 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.984 INFO  dummyMultiplePassReadWalker - Starting traversal pass 25
20:33:07.985 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:07.985 INFO  ProgressMeter -             unmapped              0.0                   200        2000000.0
20:33:07.985 INFO  ProgressMeter - Traversal complete. Processed 200 total reads in 0.0 minutes.
20:33:07.985 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.990 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.990 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.990 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.990 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.990 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.990 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.990 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.990 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.990 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.990 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.990 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.990 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.990 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.990 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:07.990 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:07.990 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:07.990 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:07.994 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:33:07.995 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:07 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:07.999 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.999 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:07.999 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:07.999 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:07.999 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:07.999 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:07 PM UTC
20:33:07.999 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.999 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:07.999 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:07.999 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:07.999 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:07.999 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:07.999 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:07.999 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:08.000 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:08.000 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:08.000 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:08.003 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:33:08.003 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:08 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:08.007 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.007 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:08.007 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:08.007 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:08.007 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:08.007 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:08 PM UTC
20:33:08.007 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.007 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.007 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:08.007 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:08.007 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:08.007 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:08.007 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:08.007 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:08.007 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:08.007 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:08.007 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:08.010 INFO  IntervalArgumentCollection - Processing 31 bp from intervals
20:33:08.010 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:08 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:08.016 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.016 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:08.016 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:08.016 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:08.016 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:08.016 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:08 PM UTC
20:33:08.016 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.016 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.016 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:08.016 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:08.016 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:08.016 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:08.016 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:08.016 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:08.016 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:08.016 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:08.016 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:08.018 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:08.018 INFO  ProgressMeter - Starting traversal
20:33:08.018 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:08.018 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:08.018 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:33:08.018 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:08.018 INFO  ProgressMeter -             unmapped              0.0                    16         Infinity
20:33:08.018 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
20:33:08.018 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:08 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:08.025 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.025 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:08.025 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:08.025 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:08.025 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:08.025 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:08 PM UTC
20:33:08.026 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.026 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.026 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:08.026 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:08.026 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:08.026 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:08.026 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:08.026 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:08.026 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:08.026 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:08.026 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:08.027 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:08.027 INFO  ProgressMeter - Starting traversal
20:33:08.027 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:08.030 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:08.031 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:33:08.031 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:08.031 INFO  ProgressMeter -             unmapped              0.0                    16         240000.0
20:33:08.031 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
20:33:08.031 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:08 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600
20:33:08.038 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.038 INFO  dummyMultiplePassReadWalker - org.broadinstitute.hellbender.engine vUnavailable
20:33:08.038 INFO  dummyMultiplePassReadWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
20:33:08.038 INFO  dummyMultiplePassReadWalker - Executing as runner@pkrvmq0rgcvqdmg on Linux v6.11.0-1018-azure amd64
20:33:08.038 INFO  dummyMultiplePassReadWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
20:33:08.038 INFO  dummyMultiplePassReadWalker - Start Date/Time: July 15, 2025 at 8:33:08 PM UTC
20:33:08.038 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.038 INFO  dummyMultiplePassReadWalker - ------------------------------------------------------------
20:33:08.038 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
20:33:08.038 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
20:33:08.038 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
20:33:08.038 INFO  dummyMultiplePassReadWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
20:33:08.038 INFO  dummyMultiplePassReadWalker - Deflater: IntelDeflater
20:33:08.038 INFO  dummyMultiplePassReadWalker - Inflater: IntelInflater
20:33:08.038 INFO  dummyMultiplePassReadWalker - GCS max retries/reopens: 20
20:33:08.038 INFO  dummyMultiplePassReadWalker - Requester pays: disabled
20:33:08.038 INFO  dummyMultiplePassReadWalker - Initializing engine
20:33:08.039 INFO  dummyMultiplePassReadWalker - Done initializing engine
20:33:08.040 INFO  ProgressMeter - Starting traversal
20:33:08.040 INFO  ProgressMeter -        Current Locus  Elapsed Minutes       Reads Processed     Reads/Minute
20:33:08.043 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:08.043 INFO  dummyMultiplePassReadWalker - Starting traversal pass 2
20:33:08.046 INFO  dummyMultiplePassReadWalker - 0 read(s) filtered by: WellformedReadFilter 

20:33:08.046 INFO  ProgressMeter -             unmapped              0.0                    16         160000.0
20:33:08.046 INFO  ProgressMeter - Traversal complete. Processed 16 total reads in 0.0 minutes.
20:33:08.046 INFO  dummyMultiplePassReadWalker - Shutting down engine
[July 15, 2025 at 8:33:08 PM UTC] org.broadinstitute.hellbender.engine.MultiplePassReadWalkerUnitTest$dummyMultiplePassReadWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=629145600