Class org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSourceUnitTest

16

tests

0

failures

0

ignored

0.006s

duration

100%

successful

Tests

Test Duration Result
testIntervalConversion[0](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSource@10a1182b, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@3b83d0e5, 20:2-10) 0.002s passed
testIntervalConversion[1](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSource@10a1182b, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@3b83d0e5, 20:4-5) 0.001s passed
testIntervalConversion[2](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSource@10a1182b, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@3b83d0e5, 20:4,000-5,000) 0.001s passed
testIntervalConversion[3](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceFileSparkSource@10a1182b, org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@3b83d0e5, 20:4,0,0,0-5,0,0,0) 0.001s passed
testIsTwoBit[0](/home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.2bit, true) 0.001s passed
testIsTwoBit[1](file:///home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.2bit, true) 0s passed
testIsTwoBit[2](/home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, false) 0s passed
testIsTwoBit[3](file:///home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens_assembly38.fasta.gz, false) 0s passed
testIsTwoBit[4](gs://hellbender/test/resources/large/human_g1k_v37.20.21.2bit, true) 0s passed
testIsTwoBit[5](gs://hellbender/test/resources/large/human_g1k_v37.20.21.fasta, false) 0s passed
testIsTwoBit[6](gs://hellbender/test/resources/large/human_g1k_v37.20.21.2bit?query=param, true) 0s passed
testIsTwoBit[7](gs://hellbender/test/resources/large/human_g1k_v37.20.21.fasta?query=param, false) 0s passed
testQueryPastContigEnd[0](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@59475f2a, 20:63025420-63025521, 101, 63025520) 0s passed
testQueryPastContigEnd[1](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@59475f2a, 20:63025420-63025620, 101, 63025520) 0s passed
testQueryPastContigEnd[2](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@59475f2a, 20:63025519-63025521, 2, 63025520) 0s passed
testQueryPastContigEnd[3](org.broadinstitute.hellbender.engine.spark.datasources.ReferenceTwoBitSparkSource@59475f2a, 20:63025520-63025521, 1, 63025520) 0s passed

Standard error

20:34:00.261 INFO  BlockManagerInfo - Removed broadcast_614_piece0 on localhost:45281 in memory (size: 50.2 KiB, free: 1919.7 MiB)
20:34:00.261 INFO  BlockManagerInfo - Removed broadcast_613_piece0 on localhost:45281 in memory (size: 154.0 KiB, free: 1919.8 MiB)
20:34:00.262 INFO  BlockManagerInfo - Removed broadcast_615_piece0 on localhost:45281 in memory (size: 154.0 KiB, free: 1920.0 MiB)
20:34:00.262 INFO  BlockManagerInfo - Removed broadcast_612_piece0 on localhost:45281 in memory (size: 50.2 KiB, free: 1920.0 MiB)