Class org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotationUnitTest

50

tests

0

failures

0

ignored

0.003s

duration

100%

successful

Tests

Test Duration Result
testGetFieldFail[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, TESTFIELD_OMICRON) 0s passed
testGetFieldFail[1](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, hugoSymmbol) 0s passed
testGetFieldFail[2](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, GENCODE_hugoSymbol) 0s passed
testGetFieldNames[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@bd990f5f, [Gencode_TEST_VERSION_hugoSymbol, Gencode_TEST_VERSION_ncbiBuild, Gencode_TEST_VERSION_chromosome, Gencode_TEST_VERSION_start, Gencode_TEST_VERSION_end, Gencode_TEST_VERSION_variantClassification, Gencode_TEST_VERSION_secondaryVariantClassification, Gencode_TEST_VERSION_variantType, Gencode_TEST_VERSION_refAllele, Gencode_TEST_VERSION_tumorSeqAllele1, Gencode_TEST_VERSION_tumorSeqAllele2, Gencode_TEST_VERSION_genomeChange, Gencode_TEST_VERSION_annotationTranscript, Gencode_TEST_VERSION_transcriptStrand, Gencode_TEST_VERSION_transcriptExon, Gencode_TEST_VERSION_transcriptPos, Gencode_TEST_VERSION_cDnaChange, Gencode_TEST_VERSION_codonChange, Gencode_TEST_VERSION_proteinChange, Gencode_TEST_VERSION_gcContent, Gencode_TEST_VERSION_referenceContext, Gencode_TEST_VERSION_otherTranscripts]) 0s passed
testGetField[0](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, Gencode_TEST_VERSION_hugoSymbol, TESTGENE) 0s passed
testGetField[10](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@b1c4c289, end, OVERRIDE) 0s passed
testGetField[11](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, variantClassification, NONSENSE) 0s passed
testGetField[12](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9f291771, variantClassification, OVERRIDE) 0s passed
testGetField[13](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, secondaryVariantClassification, INTRON) 0s passed
testGetField[14](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@2af28589, secondaryVariantClassification, OVERRIDE) 0s passed
testGetField[15](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, variantType, SNP) 0s passed
testGetField[16](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@37b6f471, variantType, OVERRIDE) 0.001s passed
testGetField[17](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, refAllele, A) 0s passed
testGetField[18](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@8ab50889, refAllele, OVERRIDE) 0s passed
testGetField[19](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, tumorSeqAllele1, A) 0s passed
testGetField[1](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, hugoSymbol, TESTGENE) 0s passed
testGetField[20](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@64181171, tumorSeqAllele1, OVERRIDE) 0s passed
testGetField[21](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, tumorSeqAllele2, T) 0s passed
testGetField[22](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@ef3c4b89, tumorSeqAllele2, OVERRIDE) 0s passed
testGetField[23](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, genomeChange, big_%20_changes) 0s passed
testGetField[24](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@801c6e71, genomeChange, OVERRIDE) 0s passed
testGetField[25](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, annotationTranscript, T1) 0s passed
testGetField[26](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@42b84e89, annotationTranscript, OVERRIDE) 0s passed
testGetField[27](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, transcriptStrand, 3') 0s passed
testGetField[28](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@9b940b71, transcriptStrand, OVERRIDE) 0s passed
testGetField[29](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, transcriptExon, 1) 0s passed
testGetField[2](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@c3ccf1c4, hugoSymbol, GARBAGEDAY) 0s passed
testGetField[30](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@3b591189, transcriptExon, OVERRIDE) 0s passed
testGetField[31](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, transcriptPos, 1) 0.001s passed
testGetField[32](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@7a4ee871, transcriptPos, OVERRIDE) 0s passed
testGetField[33](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, cDnaChange, A) 0s passed
testGetField[34](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@5b4e9489, cDnaChange, OVERRIDE) 0s passed
testGetField[35](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, codonChange, ATC) 0s passed
testGetField[36](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@941d0571, codonChange, OVERRIDE) 0s passed
testGetField[37](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, proteinChange, Lys) 0s passed
testGetField[38](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@f0c8d789, proteinChange, OVERRIDE) 0s passed
testGetField[39](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, gcContent, 1.0) 0s passed
testGetField[3](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, ncbiBuild, BUILD1) 0s passed
testGetField[40](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@14ce6271, gcContent, OVERRIDE) 0s passed
testGetField[41](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, referenceContext, ATGCGCAT) 0s passed
testGetField[42](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@15f7da89, referenceContext, OVERRIDE) 0s passed
testGetField[43](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, otherTranscripts, ONE/TWO/THREE) 0.001s passed
testGetField[44](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@dc32ff71, otherTranscripts, OVERRIDE) 0s passed
testGetField[4](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@3e471d71, ncbiBuild, OVERRIDE) 0s passed
testGetField[5](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, chromosome, chr1) 0s passed
testGetField[6](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@ccfbbf89, chromosome, OVERRIDE) 0s passed
testGetField[7](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, start, 1) 0s passed
testGetField[8](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@f29e7a71, start, OVERRIDE) 0s passed
testGetField[9](org.broadinstitute.hellbender.tools.funcotator.dataSources.gencode.GencodeFuncotation@62ce91bd, end, 100) 0s passed
testVariantClassificationSeverityOverride 0s passed