Class org.broadinstitute.hellbender.tools.sv.cluster.SVClusterEngineTest

all > org.broadinstitute.hellbender.tools.sv.cluster > SVClusterEngineTest
43

tests
0

failures
0

ignored
0.962s

duration
100%

successful

Tests

Test Duration Result
testAdd 0.019s passed
testAddMaxCliqueLarge 0.063s passed
testAddVaryPositions[0](10000, 20001, 12000, 22001, 14000, 24001, SINGLE_LINKAGE, 1) 0.001s passed
testAddVaryPositions[1](10000, 20001, 12000, 22001, 14001, 24002, SINGLE_LINKAGE, 2) 0s passed
testAddVaryPositions[2](10000, 20001, 12001, 22002, 14002, 24003, SINGLE_LINKAGE, 3) 0.001s passed
testAddVaryPositions[3](10000, 20001, 11000, 21001, 12000, 22001, MAX_CLIQUE, 1) 0s passed
testAddVaryPositions[4](10000, 20001, 12000, 22001, 14000, 24001, MAX_CLIQUE, 2) 0.001s passed
testAddVaryPositions[5](10000, 20001, 12001, 22002, 14002, 24003, MAX_CLIQUE, 3) 0s passed
testCollapser 0.009s passed
testGetCarrierSamplesBiallelic[0](0, null, null, [I@1cb3de26, [Ljava.lang.String;@7307e418) 0.001s passed
testGetCarrierSamplesBiallelic[10](2, N*, <DEL>, [I@61774805, [Ljava.lang.String;@57e351a) 0s passed
testGetCarrierSamplesBiallelic[11](2, N*, <DEL>, [I@4098ef14, [Ljava.lang.String;@1b74a062) 0s passed
testGetCarrierSamplesBiallelic[12](2, N*, <DEL>, [I@160a8986, [Ljava.lang.String;@11ed241c) 0s passed
testGetCarrierSamplesBiallelic[13](2, N*, <DUP>, [I@74ae2dec, [Ljava.lang.String;@36aacc46) 0s passed
testGetCarrierSamplesBiallelic[14](2, N*, <DUP>, [I@46bc9802, [Ljava.lang.String;@43f81c74) 0s passed
testGetCarrierSamplesBiallelic[15](3, N*, <DEL>, [I@13653a0b, [Ljava.lang.String;@31bbcced) 0.001s passed
testGetCarrierSamplesBiallelic[16](3, N*, <DEL>, [I@45682e3e, [Ljava.lang.String;@6c8a806c) 0s passed
testGetCarrierSamplesBiallelic[1](0, null, <DEL>, [I@69c27acb, [Ljava.lang.String;@72b8b04f) 0s passed
testGetCarrierSamplesBiallelic[2](0, N*, null, [I@75be3cdf, [Ljava.lang.String;@f500481) 0.001s passed
testGetCarrierSamplesBiallelic[3](0, ., null, [I@3bc57af4, [Ljava.lang.String;@3f19f197) 0s passed
testGetCarrierSamplesBiallelic[4](0, ., <DEL>, [I@6757ed9e, [Ljava.lang.String;@77d5395a) 0s passed
testGetCarrierSamplesBiallelic[5](0, N*, <DEL>, [I@2381a837, [Ljava.lang.String;@7be29ac4) 0s passed
testGetCarrierSamplesBiallelic[6](0, N*, <DEL>, [I@25c887ca, [Ljava.lang.String;@ba65354) 0s passed
testGetCarrierSamplesBiallelic[7](1, N*, <DEL>, [I@5af850f1, [Ljava.lang.String;@3b6f7ab3) 0s passed
testGetCarrierSamplesBiallelic[8](1, N*, <DEL>, [I@87f8146, [Ljava.lang.String;@10982760) 0s passed
testGetCarrierSamplesBiallelic[9](2, N*, <DEL>, [I@7cc742d, [Ljava.lang.String;@734db023) 0s passed
testLargeRandom 0.857s passed
testLinkage 0s passed
testSampleOverlap[0]([Ljava.lang.String;@77c77a64, [Ljava.lang.String;@664c6bbc, 0, true) 0.001s passed
testSampleOverlap[10]([Ljava.lang.String;@867e628, [Ljava.lang.String;@7739bcca, 1, false) 0s passed
testSampleOverlap[11]([Ljava.lang.String;@21dfec, [Ljava.lang.String;@37403f66, 1, true) 0.001s passed
testSampleOverlap[12]([Ljava.lang.String;@cd8e702, [Ljava.lang.String;@28897ca, 0.1, false) 0s passed
testSampleOverlap[13]([Ljava.lang.String;@11501f90, [Ljava.lang.String;@5afb0a4f, 0.5, true) 0.001s passed
testSampleOverlap[14]([Ljava.lang.String;@18cdacd, [Ljava.lang.String;@10b1f9f3, 1, false) 0s passed
testSampleOverlap[1]([Ljava.lang.String;@7e09bee, [Ljava.lang.String;@1bb1c6dd, 1, true) 0.001s passed
testSampleOverlap[2]([Ljava.lang.String;@5920c4ed, [Ljava.lang.String;@5a1c0bcc, 0, true) 0s passed
testSampleOverlap[3]([Ljava.lang.String;@2799f9a, [Ljava.lang.String;@5da13494, 0.1, false) 0.001s passed
testSampleOverlap[4]([Ljava.lang.String;@5d260659, [Ljava.lang.String;@136dc728, 1, true) 0s passed
testSampleOverlap[5]([Ljava.lang.String;@687e9f0b, [Ljava.lang.String;@5074893, 0, true) 0.001s passed
testSampleOverlap[6]([Ljava.lang.String;@5d9576a0, [Ljava.lang.String;@418f3cde, 0, true) 0s passed
testSampleOverlap[7]([Ljava.lang.String;@720da195, [Ljava.lang.String;@4dbf902, 0.5, true) 0.001s passed
testSampleOverlap[8]([Ljava.lang.String;@5f27d271, [Ljava.lang.String;@4039d109, 0.5, true) 0s passed
testSampleOverlap[9]([Ljava.lang.String;@75715a14, [Ljava.lang.String;@14a4ba91, 0.5, false) 0.001s passed

Standard error

20:41:54.455 DEBUG ExecutorMetricsPoller - removing (45, 0) from stageTCMP
20:41:54.456 DEBUG ExecutorMetricsPoller - removing (43, 0) from stageTCMP
20:41:54.456 DEBUG ExecutorMetricsPoller - removing (40, 0) from stageTCMP
20:41:54.456 DEBUG ExecutorMetricsPoller - removing (38, 0) from stageTCMP
20:41:54.456 DEBUG ExecutorMetricsPoller - removing (46, 0) from stageTCMP
20:41:54.456 DEBUG ExecutorMetricsPoller - removing (44, 0) from stageTCMP
20:41:54.456 DEBUG ExecutorMetricsPoller - removing (41, 0) from stageTCMP
20:41:54.456 DEBUG ExecutorMetricsPoller - removing (37, 0) from stageTCMP
20:41:54.456 DEBUG ExecutorMetricsPoller - removing (39, 0) from stageTCMP