Class org.broadinstitute.hellbender.tools.walkers.annotator.InbreedingCoeffUnitTest
Tests
Test |
Duration |
Result |
compareOldWithReblocked |
0.001s |
passed |
testAllHetsForLargeCohorts |
0.661s |
passed |
testEmptyIfNoGenotypes |
0.001s |
passed |
testInbreedingCoeffForMultiallelicVC |
0.001s |
passed |
testInbreedingCoeffForMultiallelicVC_AS |
0.004s |
passed |
testInbreedingCoeffForMultiallelicVC_refAltFlip |
0s |
passed |
testInbreedingCoeffForMultiallelicVC_usingFounders |
0s |
passed |
testInbreedingCoeffForMultiallelicVC_usingPedigreeFile |
0.002s |
passed |
testLabels |
0s |
passed |
testLabels_AS |
0s |
passed |
testLargeCohorts |
1.208s |
passed |
testRoundingIsntAppliedToEachGenotype |
0s |
passed |
testSingletonVsCommonAllele |
0.006s |
passed |
testSingletonVsCommonAllele_refAltFlip |
0.006s |
passed |
testTinyCohorts_AS |
0s |
passed |
Standard error
20:41:58.426 DEBUG GenomeLocParser - Prepared reference sequence contig dictionary
20:41:58.426 DEBUG GenomeLocParser - 1 (16000 bp)
20:41:58.426 DEBUG GenomeLocParser - 2 (16000 bp)
20:41:58.426 DEBUG GenomeLocParser - 3 (16000 bp)
20:41:58.426 DEBUG GenomeLocParser - 4 (16000 bp)
20:41:59.089 WARN InbreedingCoeff - InbreedingCoeff will not be calculated at position null:0 and possibly subsequent; at least 10 samples must have called genotypes
20:41:59.095 INFO PedReader - Phenotype is other? false