Test |
Duration |
Result |
testCreate[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp8911020636610616915.tar.gz, true, MODERATE) |
0.001s |
passed |
testCreate[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp213667637330128475797.fasta, false, MODERATE) |
0s |
passed |
testCreate[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp316482259391201474730.vcf, true, MINIMAL) |
0.001s |
passed |
testCreate[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp48909176076352165205.fasta, false, MINIMAL) |
0s |
passed |
testCreate[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp53384710625574331338.vcf, null, MINIMAL) |
0s |
passed |
testCreate[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp63070868071484502011.xsv, false, null) |
0s |
passed |
testCreate[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp718001692719974214142.vcf, null, null) |
0.001s |
passed |
testGetDest[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp17490504769977251894.tar.gz, true, MODERATE) |
0.001s |
passed |
testGetDest[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp214441529269138283133.fasta, false, MODERATE) |
0s |
passed |
testGetDest[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp317280288834199164885.vcf, true, MINIMAL) |
0s |
passed |
testGetDest[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp42745423189246681322.fasta, false, MINIMAL) |
0.001s |
passed |
testGetDest[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp56331352738075062153.vcf, null, MINIMAL) |
0s |
passed |
testGetDest[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp611477391462078490682.xsv, false, null) |
0s |
passed |
testGetDest[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp712646458290478746942.vcf, null, null) |
0.001s |
passed |
testGetSource[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp14098565034398278916.tar.gz, true, MODERATE) |
0s |
passed |
testGetSource[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp29605653665720647156.fasta, false, MODERATE) |
0s |
passed |
testGetSource[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp317129889770362918275.vcf, true, MINIMAL) |
0s |
passed |
testGetSource[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp417310323778907484864.fasta, false, MINIMAL) |
0s |
passed |
testGetSource[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp514202469606725974922.vcf, null, MINIMAL) |
0.001s |
passed |
testGetSource[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp614167631740530502419.xsv, false, null) |
0s |
passed |
testGetSource[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp78766787065400338743.vcf, null, null) |
0s |
passed |
testIsDoLogProgress[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp17240917628745373754.tar.gz, true, MODERATE) |
0s |
passed |
testIsDoLogProgress[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp26263487343111834924.fasta, false, MODERATE) |
0s |
passed |
testIsDoLogProgress[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp31842018851342023892.vcf, true, MINIMAL) |
0.001s |
passed |
testIsDoLogProgress[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp41252203639284088249.fasta, false, MINIMAL) |
0s |
passed |
testIsDoLogProgress[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp52439776781332407997.vcf, null, MINIMAL) |
0s |
passed |
testIsDoLogProgress[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp68709580402537671698.xsv, false, null) |
0.001s |
passed |
testIsDoLogProgress[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp75022701791256754099.vcf, null, null) |
0s |
passed |
testIsOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp14653423406208318283.tar.gz, true, MODERATE) |
0s |
passed |
testIsOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/gencode.v19.pc_transcripts.fasta, /tmp/tmp210290626266320155590.fasta, false, MODERATE) |
0s |
passed |
testIsOverwriteExisting[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/dbSNP_hg19_snippet.vcf, /tmp/tmp315731170257282893037.vcf, true, MINIMAL) |
0.001s |
passed |
testIsOverwriteExisting[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/hg38.3.tar.gz, /tmp/tmp41379095624202768965.fasta, false, MINIMAL) |
0s |
passed |
testIsOverwriteExisting[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/PIK3CA_INDELS, /tmp/tmp511831599167895671374.vcf, null, MINIMAL) |
0s |
passed |
testIsOverwriteExisting[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/xsv_DEADBEEFSV_testFile.csv, /tmp/tmp64465780178131589781.xsv, false, null) |
0s |
passed |
testIsOverwriteExisting[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/funcotator/snpTest_chr19_hg19.vcf, /tmp/tmp72428635683289783834.vcf, null, null) |
0.001s |
passed |
testSetOverwriteExisting[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp9775005869586000868.tar.gz, false, MODERATE, false) |
0s |
passed |
testSetOverwriteExisting[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp5158015806093570533.tar.gz, true, MODERATE, true) |
0.001s |
passed |
testSetVerbosity[0](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp16190704316044004662.tar.gz, true, MODERATE, MODERATE) |
0s |
passed |
testSetVerbosity[1](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp12235379809374765523.tar.gz, true, MINIMAL, MINIMAL) |
0.001s |
passed |
testSetVerbosity[2](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp8906579844749398018.tar.gz, true, SILENT, SILENT) |
0s |
passed |
testSetVerbosity[3](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp5061788963530766253.tar.gz, true, VERBOSE, VERBOSE) |
0s |
passed |
testSetVerbosity[4](/home/runner/work/gatk/gatk/src/test/resources/large/funcotator/GRCh37.p13.chr19.tar.gz, /tmp/tmp6440850348813666406.tar.gz, true, null, MODERATE) |
0.001s |
passed |