Class org.broadinstitute.hellbender.utils.pileup.ReadPileupUnitTest

53

tests

0

failures

0

ignored

0.028s

duration

100%

successful

Tests

Test Duration Result
testEmptyPileup 0.002s passed
testFixOverlappingQualitiesDeletedElements 0.001s passed
testFixPairOverlappingQualitiesCap 0.001s passed
testFixPairOverlappingQualitiesFromReadPileup[0](default_read @ 0 = A Q60, default_read @ 0 = A Q10, 70, 0) 0.002s passed
testFixPairOverlappingQualitiesFromReadPileup[1](default_read @ 1 = A Q60, default_read @ 1 = T Q60, 48, 0) 0s passed
testFixPairOverlappingQualitiesFromReadPileup[2](default_read @ 2 = A Q60, default_read @ 2 = T Q10, 48, 0) 0s passed
testFixPairOverlappingQualitiesFromReadPileup[3](default_read @ 3 = A Q10, default_read @ 3 = T Q60, 0, 48) 0s passed
testFixPairOverlappingQualitiesFromReadPileup[4](default_read @ 4 = T Q60, default_read @ 4 = T Q60, 93, 0) 0s passed
testFixPairOverlappingQualitiesFromReadPileup[5](default_read @ 5 = T Q93, default_read @ 5 = T Q93, 93, 0) 0s passed
testFixPairOverlappingQualities[0](default_read @ 0 = A Q60, default_read @ 0 = A Q10, 70, 0) 0s passed
testFixPairOverlappingQualities[1](default_read @ 1 = A Q60, default_read @ 1 = T Q60, 48, 0) 0s passed
testFixPairOverlappingQualities[2](default_read @ 2 = A Q60, default_read @ 2 = T Q10, 48, 0) 0s passed
testFixPairOverlappingQualities[3](default_read @ 3 = A Q10, default_read @ 3 = T Q60, 0, 48) 0s passed
testFixPairOverlappingQualities[4](default_read @ 4 = T Q60, default_read @ 4 = T Q60, 93, 0) 0s passed
testFixPairOverlappingQualities[5](default_read @ 5 = T Q93, default_read @ 5 = T Q93, 93, 0) 0s passed
testGetPileup 0.004s passed
testGetPileupForSample 0.003s passed
testInvalidConstructorParametersReadsAndOffsetsLists 0.001s passed
testOverlappingFragmentFilter 0s passed
testReadPileupCountingTestSinglePileup[0](ReadPileupCountTest{sample='sample241f851d-ca6e-4baf-880a-c7a6a5a36878', nReads=10, nMapq0=0, nDeletions=0}) 0.004s passed
testReadPileupCountingTestSinglePileup[10](ReadPileupCountTest{sample='sample1984f6ee-93c4-4e80-93d8-61d92c2f4982', nReads=30, nMapq0=10, nDeletions=0}) 0s passed
testReadPileupCountingTestSinglePileup[11](ReadPileupCountTest{sample='samplecb97b8ee-6aa3-4047-aa85-9199cd71afbb', nReads=20, nMapq0=10, nDeletions=10}) 0s passed
testReadPileupCountingTestSinglePileup[12](ReadPileupCountTest{sample='sample90a12646-a603-4d08-8f9b-615986d57a65', nReads=30, nMapq0=10, nDeletions=10}) 0s passed
testReadPileupCountingTestSinglePileup[13](ReadPileupCountTest{sample='sample1a5a4f2c-d344-4714-bbba-d838ce81f03b', nReads=40, nMapq0=10, nDeletions=10}) 0s passed
testReadPileupCountingTestSinglePileup[14](ReadPileupCountTest{sample='sampleea082114-e23b-419f-8b6d-86423cb9b2b2', nReads=30, nMapq0=10, nDeletions=20}) 0s passed
testReadPileupCountingTestSinglePileup[15](ReadPileupCountTest{sample='sample0799b18a-2903-45f1-8333-0ef2701a5f29', nReads=40, nMapq0=10, nDeletions=20}) 0.001s passed
testReadPileupCountingTestSinglePileup[16](ReadPileupCountTest{sample='sample19f22ad4-5b6f-44c7-9077-7813f4b8955a', nReads=50, nMapq0=10, nDeletions=20}) 0s passed
testReadPileupCountingTestSinglePileup[17](ReadPileupCountTest{sample='samplee986bfae-45cb-46c9-8623-c674b0ed59a2', nReads=20, nMapq0=20, nDeletions=0}) 0s passed
testReadPileupCountingTestSinglePileup[18](ReadPileupCountTest{sample='samplef19cccc4-e26c-4bd4-83fc-08b1bf4df7c4', nReads=30, nMapq0=20, nDeletions=0}) 0s passed
testReadPileupCountingTestSinglePileup[19](ReadPileupCountTest{sample='sample89fde351-e8aa-4454-b1be-11e75e30b374', nReads=40, nMapq0=20, nDeletions=0}) 0s passed
testReadPileupCountingTestSinglePileup[1](ReadPileupCountTest{sample='sampleb147b54c-9ab2-44db-bde3-25ba2b876c5f', nReads=20, nMapq0=0, nDeletions=0}) 0s passed
testReadPileupCountingTestSinglePileup[20](ReadPileupCountTest{sample='sample01452e17-f017-4a1a-98f5-9b9392c0bc07', nReads=30, nMapq0=20, nDeletions=10}) 0s passed
testReadPileupCountingTestSinglePileup[21](ReadPileupCountTest{sample='sample1543c48f-b9d8-4d2a-8b91-9e91352644d4', nReads=40, nMapq0=20, nDeletions=10}) 0.001s passed
testReadPileupCountingTestSinglePileup[22](ReadPileupCountTest{sample='sample00b58486-b92a-4f80-b260-05a217e90c49', nReads=50, nMapq0=20, nDeletions=10}) 0s passed
testReadPileupCountingTestSinglePileup[23](ReadPileupCountTest{sample='sample87b8ad5a-0ea9-442f-a4cc-975a49543e13', nReads=40, nMapq0=20, nDeletions=20}) 0s passed
testReadPileupCountingTestSinglePileup[24](ReadPileupCountTest{sample='sampleb4917358-5985-4c19-b7c4-1e9cf4b871b6', nReads=50, nMapq0=20, nDeletions=20}) 0s passed
testReadPileupCountingTestSinglePileup[25](ReadPileupCountTest{sample='samplecc7fb257-4468-4d8c-81c6-9d1bf14475e8', nReads=60, nMapq0=20, nDeletions=20}) 0s passed
testReadPileupCountingTestSinglePileup[2](ReadPileupCountTest{sample='samplebedc526c-0598-4726-b3ee-7db0480d3d43', nReads=10, nMapq0=0, nDeletions=10}) 0s passed
testReadPileupCountingTestSinglePileup[3](ReadPileupCountTest{sample='sampleb7b08933-d709-4deb-a386-4372d9380cd2', nReads=20, nMapq0=0, nDeletions=10}) 0s passed
testReadPileupCountingTestSinglePileup[4](ReadPileupCountTest{sample='samplec40186ca-3874-44bb-989c-b0176cfde59c', nReads=30, nMapq0=0, nDeletions=10}) 0s passed
testReadPileupCountingTestSinglePileup[5](ReadPileupCountTest{sample='samplecae0aefd-e91f-462f-9779-6ab22866a8f8', nReads=20, nMapq0=0, nDeletions=20}) 0s passed
testReadPileupCountingTestSinglePileup[6](ReadPileupCountTest{sample='sample5197ee3d-19e8-4ba4-829e-68f9572f7f1f', nReads=30, nMapq0=0, nDeletions=20}) 0.001s passed
testReadPileupCountingTestSinglePileup[7](ReadPileupCountTest{sample='sample204ef8d2-4b6a-4e84-9083-2c639c558fd6', nReads=40, nMapq0=0, nDeletions=20}) 0s passed
testReadPileupCountingTestSinglePileup[8](ReadPileupCountTest{sample='sample76541c5f-3736-4113-9cab-c555d2f82d44', nReads=10, nMapq0=10, nDeletions=0}) 0s passed
testReadPileupCountingTestSinglePileup[9](ReadPileupCountTest{sample='sampleac2e75f3-261f-494b-b330-7a6a2aeabe90', nReads=20, nMapq0=10, nDeletions=0}) 0s passed
testReadPileupMappingQuals 0s passed
testSimplePileup 0.002s passed
testSimplePileupWithIndelsOffset 0.002s passed
testSimplePileupWithOffset 0.001s passed
testSortedIterator 0s passed
testSplitByNullReadGroups 0s passed
testSplitByReadGroup 0.001s passed
testSplitBySampleMissingReadGroupException 0.001s passed