Class org.broadinstitute.hellbender.utils.spark.SparkUtilsUnitTest
|
100%
successful |
Tests
Test | Duration | Result |
---|---|---|
testConvertHeaderlessHadoopBamShardToBam | 0.004s | passed |
testInvalidSort | 1.387s | passed |
testPathExists | 1.905s | passed |
testPutReadsWithSameNameInSamePartition[0](1, 1, 2, [I@786ee9d5) | 0.633s | passed |
testPutReadsWithSameNameInSamePartition[10](20, 7, 5, [I@761d21b) | 0.061s | passed |
testPutReadsWithSameNameInSamePartition[1](2, 2, 2, [I@75f9539a) | 0.076s | passed |
testPutReadsWithSameNameInSamePartition[2](3, 2, 2, [I@58f73dfb) | 0.078s | passed |
testPutReadsWithSameNameInSamePartition[3](3, 3, 2, [I@647e8f85) | 0.070s | passed |
testPutReadsWithSameNameInSamePartition[4](6, 2, 2, [I@66ebe0d2) | 0.065s | passed |
testPutReadsWithSameNameInSamePartition[5](6, 3, 2, [I@3a28afd6) | 0.068s | passed |
testPutReadsWithSameNameInSamePartition[6](6, 4, 2, [I@211b7f6c) | 0.054s | passed |
testPutReadsWithSameNameInSamePartition[7](2, 2, 3, [I@78110383) | 0.047s | passed |
testPutReadsWithSameNameInSamePartition[8](3, 2, 10, [I@536ce294) | 0.044s | passed |
testPutReadsWithSameNameInSamePartition[9](6, 4, 3, [I@19c682ee) | 0.049s | passed |
testReadsMustBeQueryGroupedToFixPartitions | 0.002s | passed |
testReadsPairsSpanningMultiplePartitions | 0.388s | passed |
testSortCoordinateSortMatchesHtsjdk | 0.606s | passed |
testSortQuerynameFixesPartitionBoundaries | 0.295s | passed |
testSortQuerynameSortMatchesHtsjdk | 0.625s | passed |
testSortUsingElementsAsKeys | 0.060s | passed |
Standard error
20:46:06.956 WARN NativeCodeLoader - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable 20:46:08.593 WARN MetricsConfig - Cannot locate configuration: tried hadoop-metrics2-namenode.properties,hadoop-metrics2.properties 20:46:08.717 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:46:08.721 WARN HttpRequestLog - Jetty request log can only be enabled using Log4j 20:46:08.791 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:46:09.142 WARN MetricsLoggerTask - Metrics logging will not be async since the logger is not log4j 20:46:09.225 WARN AuthenticationFilter - Unable to initialize FileSignerSecretProvider, falling back to use random secrets. Reason: Could not read signature secret file: /home/runner/hadoop-http-auth-signature-secret 20:46:09.226 WARN HttpRequestLog - Jetty request log can only be enabled using Log4j 20:46:09.330 WARN DatanodeHttpServer - Got null for restCsrfPreventionFilter - will not do any filtering. 20:46:09.367 WARN MetricsLoggerTask - Metrics logging will not be async since the logger is not log4j 20:46:09.599 WARN FsDatasetImpl - dfsUsed file missing in /tmp/minicluster_storage18203545216312997496/data/data2/current/BP-551507284-10.1.0.111-1752612368397/current, will proceed with Du for space computation calculation, 20:46:09.599 WARN FsDatasetImpl - dfsUsed file missing in /tmp/minicluster_storage18203545216312997496/data/data1/current/BP-551507284-10.1.0.111-1752612368397/current, will proceed with Du for space computation calculation, 20:46:09.635 WARN DirectoryScanner - dfs.datanode.directoryscan.throttle.limit.ms.per.sec set to value above 1000 ms/sec. Assuming default value of -1 20:46:09.823 WARN IncrementalBlockReportManager - IncrementalBlockReportManager interrupted 20:46:09.823 ERROR DataNode - Command processor encountered interrupt and exit. 20:46:09.824 WARN DataNode - Ending block pool service for: Block pool BP-551507284-10.1.0.111-1752612368397 (Datanode Uuid b41c0279-4a1a-48c1-87b6-e248f9d9592a) service to localhost/127.0.0.1:37305 20:46:09.824 WARN IncrementalBlockReportManager - IncrementalBlockReportManager interrupted 20:46:09.824 WARN DataNode - Ending command processor service for: Thread[Command processor,5,main] 20:46:09.825 WARN CachingGetSpaceUsed - Thread Interrupted waiting to refresh disk information: sleep interrupted 20:46:09.825 WARN CachingGetSpaceUsed - Thread Interrupted waiting to refresh disk information: sleep interrupted