| Test |
Duration |
Result |
| testBadAutosomalContigs |
3.466s |
passed |
| testDifferentInvalidInput[0](0, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model]) |
3.471s |
passed |
| testDifferentInvalidInput[10](1, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.302s |
passed |
| testDifferentInvalidInput[11](2, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.363s |
passed |
| testDifferentInvalidInput[1](1, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model]) |
3.382s |
passed |
| testDifferentInvalidInput[2](2, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model]) |
3.332s |
passed |
| testDifferentInvalidInput[3](0, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.336s |
passed |
| testDifferentInvalidInput[4](1, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.337s |
passed |
| testDifferentInvalidInput[5](2, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.370s |
passed |
| testDifferentInvalidInput[6](0, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.367s |
passed |
| testDifferentInvalidInput[7](1, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.411s |
passed |
| testDifferentInvalidInput[8](2, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.393s |
passed |
| testDifferentInvalidInput[9](0, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
3.348s |
passed |
| testDifferentValidInput[0](0, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
21.735s |
passed |
| testDifferentValidInput[1](1, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
9.504s |
passed |
| testDifferentValidInput[2](2, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
9.413s |
passed |
| testDifferentValidInput[3](0, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model]) |
9.483s |
passed |
| testDifferentValidInput[4](1, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model]) |
9.605s |
passed |
| testDifferentValidInput[5](2, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model]) |
9.418s |
passed |
| testDifferentValidInput[6](0, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
9.476s |
passed |
| testDifferentValidInput[7](1, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
9.548s |
passed |
| testDifferentValidInput[8](2, [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-calls, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-calls], [/gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_1-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_0-model, /gatkCloneMountPoint/src/test/resources/org/broadinstitute/hellbender/tools/copynumber/gcnv-postprocess/shard_2-model]) |
9.424s |
passed |
| testQualScoreCalculationWithBreakpoints |
28.523s |
passed |