Class org.broadinstitute.hellbender.tools.walkers.vqsr.scalable.SystemCommandUtilsTest

2

tests

0

failures

0

ignored

0.018s

duration

100%

successful

Tests

Test Duration Result
testRunH5DiffException 0.012s passed
testRunH5DiffIdenticalFile 0.006s passed

Standard output

dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
size:           [1]           [1]
position        num_rows        num_rows        difference          
------------------------------------------------------------
[ 0 ]          85              760             675            
1 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found
--------------------------------
Some objects are not comparable
--------------------------------
Use -c for a list of objects.
group  : </> and </>
0 differences found
group  : </alleles> and </alleles>
0 differences found
dataset: </alleles/alt> and </alleles/alt>
0 differences found
dataset: </alleles/ref> and </alleles/ref>
0 differences found
group  : </annotations> and </annotations>
0 differences found
dataset: </annotations/chunk_0> and </annotations/chunk_0>
0 differences found
dataset: </annotations/names> and </annotations/names>
0 differences found
dataset: </annotations/num_chunks> and </annotations/num_chunks>
0 differences found
dataset: </annotations/num_columns> and </annotations/num_columns>
0 differences found
dataset: </annotations/num_rows> and </annotations/num_rows>
0 differences found
group  : </intervals> and </intervals>
0 differences found
dataset: </intervals/indexed_contig_names> and </intervals/indexed_contig_names>
0 differences found
dataset: </intervals/transposed_index_start_end> and </intervals/transposed_index_start_end>
0 differences found
group  : </labels> and </labels>
0 differences found
dataset: </labels/calibration> and </labels/calibration>
0 differences found
dataset: </labels/snp> and </labels/snp>
0 differences found
dataset: </labels/training> and </labels/training>
0 differences found