17:38:35.440 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.443 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression5174452580286485553.so: /tmp/libgkl_compression5174452580286485553.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.443 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.446 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression45926169181049372.so: /tmp/libgkl_compression45926169181049372.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.447 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.447 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.447 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.447 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.448 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.448 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.448 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.448 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.448 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.448 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.448 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.448 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.448 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.448 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.448 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.448 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.448 INFO TestMultiVariantWalker - Initializing engine
17:38:35.450 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
17:38:35.451 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.456 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.459 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression11397869662612661612.so: /tmp/libgkl_compression11397869662612661612.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.459 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.462 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression6536778043588335736.so: /tmp/libgkl_compression6536778043588335736.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.464 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.464 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.464 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.464 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.464 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.464 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.464 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.464 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.464 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.464 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.464 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.465 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.465 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.465 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.465 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.465 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.465 INFO TestMultiVariantWalker - Initializing engine
17:38:35.466 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
17:38:35.468 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
17:38:35.474 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.474 INFO ProgressMeter - Starting traversal
17:38:35.474 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.477 INFO ProgressMeter - unmapped 0.0 26 780000.0
17:38:35.477 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
17:38:35.477 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.482 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.485 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression17642481885214427701.so: /tmp/libgkl_compression17642481885214427701.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.485 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.488 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression17112187221323269540.so: /tmp/libgkl_compression17112187221323269540.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.489 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.489 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.489 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.489 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.489 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.489 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.489 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.489 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.490 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.490 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.490 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.490 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.490 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.490 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.490 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.490 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.490 INFO TestMultiVariantWalker - Initializing engine
17:38:35.491 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
17:38:35.493 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariantsConflictingDictionary.vcf
17:38:35.494 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.499 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.502 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression11011850364157036900.so: /tmp/libgkl_compression11011850364157036900.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.502 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.505 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression3041061420115183342.so: /tmp/libgkl_compression3041061420115183342.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.506 INFO TestMultiVariantWalkerIterator - ------------------------------------------------------------
17:38:35.506 INFO TestMultiVariantWalkerIterator - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.506 INFO TestMultiVariantWalkerIterator - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.506 INFO TestMultiVariantWalkerIterator - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.506 INFO TestMultiVariantWalkerIterator - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.506 INFO TestMultiVariantWalkerIterator - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.506 INFO TestMultiVariantWalkerIterator - ------------------------------------------------------------
17:38:35.506 INFO TestMultiVariantWalkerIterator - ------------------------------------------------------------
17:38:35.507 INFO TestMultiVariantWalkerIterator - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.507 INFO TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.507 INFO TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.507 INFO TestMultiVariantWalkerIterator - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.507 INFO TestMultiVariantWalkerIterator - Deflater: JdkDeflater
17:38:35.507 INFO TestMultiVariantWalkerIterator - Inflater: JdkInflater
17:38:35.507 INFO TestMultiVariantWalkerIterator - GCS max retries/reopens: 20
17:38:35.507 INFO TestMultiVariantWalkerIterator - Requester pays: disabled
17:38:35.507 INFO TestMultiVariantWalkerIterator - Initializing engine
17:38:35.509 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_WithOverlap.vcf
17:38:35.511 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_WithOverlap.vcf
17:38:35.513 INFO TestMultiVariantWalkerIterator - Done initializing engine
17:38:35.513 INFO ProgressMeter - Starting traversal
17:38:35.513 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.514 INFO ProgressMeter - unmapped 0.0 28 1680000.0
17:38:35.514 INFO ProgressMeter - Traversal complete. Processed 28 total variants in 0.0 minutes.
17:38:35.514 INFO TestMultiVariantWalkerIterator - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalkerIterator done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.518 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.521 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression16211512031448569337.so: /tmp/libgkl_compression16211512031448569337.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.521 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.524 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression2612236598548181166.so: /tmp/libgkl_compression2612236598548181166.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.526 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.526 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.526 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.526 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.526 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.526 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.526 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.526 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.526 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.526 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.527 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.527 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.527 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.527 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.527 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.527 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.527 INFO TestMultiVariantWalker - Initializing engine
17:38:35.528 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
17:38:35.530 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
17:38:35.531 WARN MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
17:38:35.531 WARN MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
17:38:35.531 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.536 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.539 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression3199328902371086918.so: /tmp/libgkl_compression3199328902371086918.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.539 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.542 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression5272012177306283673.so: /tmp/libgkl_compression5272012177306283673.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.543 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.543 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.543 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.543 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.543 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.543 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.543 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.543 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.544 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.544 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.544 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.544 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.544 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.544 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.544 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.544 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.544 INFO TestMultiVariantWalker - Initializing engine
17:38:35.545 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
17:38:35.546 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf
17:38:35.547 WARN MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2_NoDict.vcf. The input may not exist or may not have a valid header
17:38:35.548 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.548 INFO ProgressMeter - Starting traversal
17:38:35.548 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.549 INFO ProgressMeter - unmapped 0.0 26 1560000.0
17:38:35.549 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
17:38:35.549 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.554 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.557 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression14214750221123925783.so: /tmp/libgkl_compression14214750221123925783.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.557 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.560 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression602797401189133053.so: /tmp/libgkl_compression602797401189133053.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.561 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.561 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.561 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.561 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.561 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.561 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.561 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.561 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.562 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.562 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.562 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.562 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.562 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.562 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.562 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.562 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.562 INFO TestMultiVariantWalker - Initializing engine
17:38:35.563 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf
17:38:35.564 WARN MultiVariantDataSource - A sequence dictionary is required for each input when using multiple inputs, and one could not be obtained for feature input: /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1_NoDict.vcf. The input may not exist or may not have a valid header
17:38:35.564 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.564 INFO ProgressMeter - Starting traversal
17:38:35.564 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.565 INFO ProgressMeter - unmapped 0.0 13 780000.0
17:38:35.565 INFO ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
17:38:35.565 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.570 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.573 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression9812010740229860142.so: /tmp/libgkl_compression9812010740229860142.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.573 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.576 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression3206769900823917340.so: /tmp/libgkl_compression3206769900823917340.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.577 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.577 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.577 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.577 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.577 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.577 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.577 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.577 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.578 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.578 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.578 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.578 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.578 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.578 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.578 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.578 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.578 INFO TestMultiVariantWalker - Initializing engine
17:38:35.579 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
17:38:35.580 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.580 INFO ProgressMeter - Starting traversal
17:38:35.580 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.581 INFO ProgressMeter - unmapped 0.0 26 1560000.0
17:38:35.581 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
17:38:35.581 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.585 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.588 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression4023348163146042405.so: /tmp/libgkl_compression4023348163146042405.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.588 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.591 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression8294647333752510280.so: /tmp/libgkl_compression8294647333752510280.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.592 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.593 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.593 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.593 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.593 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.593 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.593 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.593 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.593 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.593 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.593 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.593 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.593 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.593 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.593 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.593 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.593 INFO TestMultiVariantWalker - Initializing engine
17:38:35.594 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
17:38:35.597 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.597 INFO ProgressMeter - Starting traversal
17:38:35.597 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.598 INFO ProgressMeter - unmapped 0.0 13 780000.0
17:38:35.598 INFO ProgressMeter - Traversal complete. Processed 13 total variants in 0.0 minutes.
17:38:35.598 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.602 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.605 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression18043452903030531073.so: /tmp/libgkl_compression18043452903030531073.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.605 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.608 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression11877376072645043026.so: /tmp/libgkl_compression11877376072645043026.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.609 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.609 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.609 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.609 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.609 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.609 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.610 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.610 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.610 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.610 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.610 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.610 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.610 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.610 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.610 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.610 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.610 INFO TestMultiVariantWalker - Initializing engine
17:38:35.611 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
17:38:35.612 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
17:38:35.614 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.614 INFO ProgressMeter - Starting traversal
17:38:35.614 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.615 INFO ProgressMeter - unmapped 0.0 26 1560000.0
17:38:35.615 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
17:38:35.615 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.620 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.623 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression5102060908529309100.so: /tmp/libgkl_compression5102060908529309100.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.623 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.626 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression13629453193479008557.so: /tmp/libgkl_compression13629453193479008557.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.627 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.627 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.627 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.627 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.627 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.627 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.627 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.627 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.628 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.628 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.628 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.628 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.628 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.628 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.628 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.628 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.628 INFO TestMultiVariantWalker - Initializing engine
17:38:35.629 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_1.vcf
17:38:35.632 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/splitVariants_2.vcf
17:38:35.634 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.634 INFO ProgressMeter - Starting traversal
17:38:35.634 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.635 INFO ProgressMeter - unmapped 0.0 26 1560000.0
17:38:35.635 INFO ProgressMeter - Traversal complete. Processed 26 total variants in 0.0 minutes.
17:38:35.635 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.639 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.642 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression4377011470167898242.so: /tmp/libgkl_compression4377011470167898242.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.642 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.645 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression16656331172445547254.so: /tmp/libgkl_compression16656331172445547254.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.646 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.646 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.647 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.647 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.647 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.647 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.647 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.647 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.647 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.647 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.647 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.647 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.647 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.647 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.647 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.647 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.647 INFO TestMultiVariantWalker - Initializing engine
17:38:35.648 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/baseVariants.vcf
17:38:35.649 INFO IntervalArgumentCollection - Processing 16000 bp from intervals
17:38:35.650 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.650 INFO ProgressMeter - Starting traversal
17:38:35.650 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.651 INFO ProgressMeter - unmapped 0.0 14 840000.0
17:38:35.651 INFO ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
17:38:35.651 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.655 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.658 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression7825254019988665191.so: /tmp/libgkl_compression7825254019988665191.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.658 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.661 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression14784218766970427372.so: /tmp/libgkl_compression14784218766970427372.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.662 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.662 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.662 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.662 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.662 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.662 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.662 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.662 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.663 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.663 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.663 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.663 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.663 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.663 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.663 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.663 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.663 INFO TestMultiVariantWalker - Initializing engine
17:38:35.664 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
17:38:35.665 INFO IntervalArgumentCollection - Processing 16000 bp from intervals
17:38:35.665 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.665 INFO ProgressMeter - Starting traversal
17:38:35.665 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.666 INFO ProgressMeter - unmapped 0.0 7 420000.0
17:38:35.666 INFO ProgressMeter - Traversal complete. Processed 7 total variants in 0.0 minutes.
17:38:35.666 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.670 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.673 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression12017961781276700992.so: /tmp/libgkl_compression12017961781276700992.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.673 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.676 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression17232361564347698215.so: /tmp/libgkl_compression17232361564347698215.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.677 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.677 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.677 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.677 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.677 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.677 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.677 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.677 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.678 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.678 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.678 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.678 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.678 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.678 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.678 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.678 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.678 INFO TestMultiVariantWalker - Initializing engine
17:38:35.679 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
17:38:35.680 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
17:38:35.682 INFO IntervalArgumentCollection - Processing 16000 bp from intervals
17:38:35.682 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.682 INFO ProgressMeter - Starting traversal
17:38:35.682 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.682 INFO ProgressMeter - unmapped 0.0 14 Infinity
17:38:35.683 INFO ProgressMeter - Traversal complete. Processed 14 total variants in 0.0 minutes.
17:38:35.683 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640
17:38:35.687 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.690 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression6387157876964760280.so: /tmp/libgkl_compression6387157876964760280.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.690 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/home/runner/.gradle/caches/modules-2/files-2.1/com.intel.gkl/gkl/0.9.1/e23340ee393a396807581d7af5b835c7fcf10ab3/gkl-0.9.1.jar!/com/intel/gkl/native/libgkl_compression.so
17:38:35.693 WARN NativeLibraryLoader - Unable to load libgkl_compression.so from native/libgkl_compression.so (/tmp/libgkl_compression15965022637473128254.so: /tmp/libgkl_compression15965022637473128254.so: cannot open shared object file: No such file or directory (Possible cause: can't load AMD 64 .so on a AARCH64 platform))
17:38:35.694 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.694 INFO TestMultiVariantWalker - org.broadinstitute.hellbender.engine vUnavailable
17:38:35.694 INFO TestMultiVariantWalker - For support and documentation go to https://software.broadinstitute.org/gatk/
17:38:35.694 INFO TestMultiVariantWalker - Executing as runner@runnervmrcw8b on Linux v6.11.0-1018-azure aarch64
17:38:35.694 INFO TestMultiVariantWalker - Java runtime: OpenJDK 64-Bit Server VM v17.0.6+10
17:38:35.694 INFO TestMultiVariantWalker - Start Date/Time: October 27, 2025 at 5:38:35 PM UTC
17:38:35.694 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.694 INFO TestMultiVariantWalker - ------------------------------------------------------------
17:38:35.695 INFO TestMultiVariantWalker - HTSJDK Defaults.COMPRESSION_LEVEL : 2
17:38:35.695 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
17:38:35.695 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
17:38:35.695 INFO TestMultiVariantWalker - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
17:38:35.695 INFO TestMultiVariantWalker - Deflater: JdkDeflater
17:38:35.695 INFO TestMultiVariantWalker - Inflater: JdkInflater
17:38:35.695 INFO TestMultiVariantWalker - GCS max retries/reopens: 20
17:38:35.695 INFO TestMultiVariantWalker - Requester pays: disabled
17:38:35.695 INFO TestMultiVariantWalker - Initializing engine
17:38:35.696 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_1.vcf
17:38:35.697 INFO FeatureManager - Using codec VCFCodec to read file file:///home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/MultiVariantDataSource/interleavedVariants_2.vcf
17:38:35.699 INFO IntervalArgumentCollection - Processing 401 bp from intervals
17:38:35.699 INFO TestMultiVariantWalker - Done initializing engine
17:38:35.699 INFO ProgressMeter - Starting traversal
17:38:35.699 INFO ProgressMeter - Current Locus Elapsed Minutes Variants Processed Variants/Minute
17:38:35.700 INFO ProgressMeter - unmapped 0.0 3 180000.0
17:38:35.700 INFO ProgressMeter - Traversal complete. Processed 3 total variants in 0.0 minutes.
17:38:35.700 INFO TestMultiVariantWalker - Shutting down engine
[October 27, 2025 at 5:38:35 PM UTC] org.broadinstitute.hellbender.engine.MultiVariantWalkerIntegrationTest$TestMultiVariantWalker done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1981808640