Class org.broadinstitute.hellbender.tools.SplitReadsIntegrationTest

all > org.broadinstitute.hellbender.tools > SplitReadsIntegrationTest
35

tests
0

failures
0

ignored
4.140s

duration
100%

successful

Tests

Test Duration Result
testSplitReadsByReadGroup[0](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [], {=19}) 0.083s passed
testSplitReadsByReadGroup[10](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [LB], {.whatever=19}) 0.068s passed
testSplitReadsByReadGroup[11](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.121s passed
testSplitReadsByReadGroup[12](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.123s passed
testSplitReadsByReadGroup[13](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.172s passed
testSplitReadsByReadGroup[14](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [], {=19}) 0.119s passed
testSplitReadsByReadGroup[15](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.171s passed
testSplitReadsByReadGroup[16](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [RG], {.0=17, .1=2}) 0.170s passed
testSplitReadsByReadGroup[17](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [LB], {.whatever=19}) 0.119s passed
testSplitReadsByReadGroup[18](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.174s passed
testSplitReadsByReadGroup[19](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.171s passed
testSplitReadsByReadGroup[1](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.085s passed
testSplitReadsByReadGroup[20](TypeImpl{name='SAM', fileExtension='sam', indexExtension='null'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.171s passed
testSplitReadsByReadGroup[21](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [], {=19}) 0.068s passed
testSplitReadsByReadGroup[22](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.119s passed
testSplitReadsByReadGroup[23](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [RG], {.0=17, .1=2}) 0.119s passed
testSplitReadsByReadGroup[24](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [LB], {.whatever=19}) 0.068s passed
testSplitReadsByReadGroup[25](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.121s passed
testSplitReadsByReadGroup[26](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.122s passed
testSplitReadsByReadGroup[27](TypeImpl{name='BAM', fileExtension='bam', indexExtension='csi'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.171s passed
testSplitReadsByReadGroup[28](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [], {=19}) 0.067s passed
testSplitReadsByReadGroup[29](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.117s passed
testSplitReadsByReadGroup[2](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [RG], {.0=17, .1=2}) 0.084s passed
testSplitReadsByReadGroup[30](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [RG], {.0=17, .1=2}) 0.118s passed
testSplitReadsByReadGroup[31](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [LB], {.whatever=19}) 0.068s passed
testSplitReadsByReadGroup[32](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.119s passed
testSplitReadsByReadGroup[33](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.221s passed
testSplitReadsByReadGroup[34](TypeImpl{name='BAM', fileExtension='bam', indexExtension='null'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.168s passed
testSplitReadsByReadGroup[3](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [LB], {.whatever=19}) 0.079s passed
testSplitReadsByReadGroup[4](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM, RG], {.Momma.0=17, .Poppa.1=2}) 0.089s passed
testSplitReadsByReadGroup[5](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads, [SM, RG, LB], {.Momma.0.whatever=17}) 0.087s passed
testSplitReadsByReadGroup[6](TypeImpl{name='CRAM', fileExtension='cram', indexExtension='crai'}, split_reads_missing_lib, [LB], {.unknown=17, .whatever=2}) 0.082s passed
testSplitReadsByReadGroup[7](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [], {=19}) 0.067s passed
testSplitReadsByReadGroup[8](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [SM], {.Momma=17, .Poppa=2}) 0.120s passed
testSplitReadsByReadGroup[9](TypeImpl{name='BAM', fileExtension='bam', indexExtension='bai'}, split_reads, [RG], {.0=17, .1=2}) 0.119s passed

Standard error

[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:14 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:15 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:16 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:17 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:17 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:17 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:17 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:17 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:17 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:17 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:17 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:18 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000
[October 27, 2025 at 5:39:18 PM UTC] org.broadinstitute.hellbender.tools.SplitReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=524288000