Class org.broadinstitute.hellbender.tools.funcotator.FuncotateSegmentsIntegrationTest

all > org.broadinstitute.hellbender.tools.funcotator > FuncotateSegmentsIntegrationTest
6

tests
0

failures
0

ignored
18.223s

duration
100%

successful

Tests

Test Duration Result
testEmptyGatkCalledSegmentFile 0.171s passed
testGatkCalledSegmentFile 2.057s passed
testHg38CalledCopyRatioSegmentsGatkFile 3.756s passed
testModelSegmentsGatkFile 12.046s passed
testSimpleMultipleGenesOverlap[0]([3:2000000-2500000, 3:3000000-3500000, 3:3500001-3900000], [CNTN4,CNTN4-AS2, CNTN4,CNTN4-AS1, ], [, CNTN4, ], [CNTN4, , ], [, , ], [, , ], [0, -, +], [0.037099, 0.001748, 0.501748], [2000, 3000, 4000], [SAMPLE1, SAMPLE1, SAMPLE1]) 0.105s passed
testSimpleNoOverlap 0.088s passed

Standard error

[October 27, 2025 at 5:42:41 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[October 27, 2025 at 5:42:43 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=2810183680
[October 27, 2025 at 5:42:47 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.06 minutes.
Runtime.totalMemory()=2810183680
[October 27, 2025 at 5:42:59 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.20 minutes.
Runtime.totalMemory()=2810183680
[October 27, 2025 at 5:42:59 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680
[October 27, 2025 at 5:42:59 PM UTC] org.broadinstitute.hellbender.tools.funcotator.FuncotateSegments done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=2810183680