Class org.broadinstitute.hellbender.tools.spark.ApplyBQSRSparkIntegrationTest

all > org.broadinstitute.hellbender.tools.spark > ApplyBQSRSparkIntegrationTest
9

tests
0

failures
0

ignored
4.820s

duration
100%

successful

Tests

Test Duration Result
testApplyBQSR[0](ApplyBQSR(args='--quantize-quals -1')) 0.865s passed
testApplyBQSR[1](ApplyBQSR(args='--quantize-quals 6')) 0.665s passed
testApplyBQSR[2](ApplyBQSR(args='null')) 0.600s passed
testApplyBQSR[3](ApplyBQSR(args='-OQ')) 0.576s passed
testApplyBQSR[4](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30')) 0.559s passed
testApplyBQSR[5](ApplyBQSR(args='--static-quantized-quals 10 --static-quantized-quals 20 --static-quantized-quals 30 --round-down-quantized')) 0.575s passed
testApplyBQSR[6](ApplyBQSR(args='--disable-sequence-dictionary-validation true')) 0.406s passed
testPRFailWithLowMaxCycle 0.144s passed
testPRNoFailWithHighMaxCycle 0.430s passed

Standard output

--------------------------------------------------------------------------------
[17:45:03] Executing test ApplyBQSRSparkIntegrationTest:testPRFailWithLowMaxCycle
--------------------------------------------------------------------------------
[17:45:03] Executing test ApplyBQSRSparkIntegrationTest:testPRNoFailWithHighMaxCycle

Standard error

[October 27, 2025 at 5:45:00 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3128950784
[October 27, 2025 at 5:45:01 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3128950784
[October 27, 2025 at 5:45:01 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3128950784
[October 27, 2025 at 5:45:02 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3128950784
[October 27, 2025 at 5:45:02 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=3128950784
[October 27, 2025 at 5:45:03 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1887436800
[October 27, 2025 at 5:45:03 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1887436800
[October 27, 2025 at 5:45:03 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1887436800
[October 27, 2025 at 5:45:04 PM UTC] org.broadinstitute.hellbender.tools.spark.ApplyBQSRSpark done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1887436800