Class org.broadinstitute.hellbender.tools.spark.RevertSamSparkIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| basicPositiveTests[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, false, false, true, true, null, null, []) | 0.381s | passed |
| basicPositiveTests[10](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.224s | passed |
| basicPositiveTests[11](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, true, true, false, false, null, null, []) | 0.226s | passed |
| basicPositiveTests[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.175s | passed |
| basicPositiveTests[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.166s | passed |
| basicPositiveTests[3](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam, null, true, true, false, false, null, null, []) | 0.171s | passed |
| basicPositiveTests[4](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, false, false, true, true, null, null, []) | 0.604s | passed |
| basicPositiveTests[5](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.245s | passed |
| basicPositiveTests[6](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, true, false, false, false, Hey,Dad!, NewLibraryName, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.250s | passed |
| basicPositiveTests[7](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam, null, true, true, false, false, null, null, []) | 0.257s | passed |
| basicPositiveTests[8](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, null, false, false, true, true, null, null, []) | 0.536s | passed |
| basicPositiveTests[9](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram, queryname, false, false, true, false, Hey,Dad!, null, [NM, UQ, PG, MD, MQ, SA, MC, AS, XT]) | 0.235s | passed |
| testFilePathsWithMapFile | 0.002s | passed |
| testIsOutputMapHeaderValid | 0s | passed |
| testNoRgInfoSanitize | 0.231s | passed |
| testOutputByReadGroupWithOutputMap[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam) | 0.394s | passed |
| testOutputByReadGroupWithOutputMap[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam) | 0.620s | passed |
| testOutputByReadGroupWithOutputMap[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram) | 0.551s | passed |
| testSampleLibraryOverride[0](NewSample, null) | 0.096s | passed |
| testSampleLibraryOverride[1](null, NewLibrary) | 0.095s | passed |
| testSampleLibraryOverride[2](NewSample, NewLibrary) | 0.095s | passed |
| testSanitizeAndDeduplicateRecords[0](.sam) | 0.314s | passed |
| testSanitizeAndDeduplicateRecords[1](.bam) | 0.940s | passed |
| testSanitizeAndDeduplicateRecords[2](.cram) | 0.780s | passed |
| testSingleEndSanitize[0](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.sam) | 0.298s | passed |
| testSingleEndSanitize[1](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.bam) | 0.925s | passed |
| testSingleEndSanitize[2](src/test/resources/org/broadinstitute/hellbender/tools/spark/RevertSamSpark/revert_sam_basic.cram) | 0.726s | passed |
Standard error
[October 27, 2025 at 5:46:28 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:28 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:28 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:29 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:29 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:29 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:30 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:30 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:31 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:31 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:31 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:31 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:31 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:32 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:32 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:33 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:33 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:33 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:33 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:34 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:35 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:35 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:36 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:37 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:37 PM UTC] org.broadinstitute.hellbender.tools.spark.RevertSamSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792