Class org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSparkIntegrationTest
|
100%
successful |
Tests
| Test | Duration | Result |
|---|---|---|
| testCoordinateSortedInRegion | 2.636s | passed |
| testFileToFile[0](print_reads.sam, .sam, null) | 0.321s | passed |
| testFileToFile[10](print_reads.sorted.sam, .bam, null) | 0.209s | passed |
| testFileToFile[11](print_reads.sorted.sam, .cram, print_reads.fasta) | 0.179s | passed |
| testFileToFile[12](print_reads.sorted.bam, .sam, null) | 0.247s | passed |
| testFileToFile[13](print_reads.sorted.bam, .bam, null) | 0.269s | passed |
| testFileToFile[14](print_reads.sorted.bam, .cram, print_reads.fasta) | 0.275s | passed |
| testFileToFile[15](print_reads.sorted.cram, .sam, print_reads.fasta) | 0.227s | passed |
| testFileToFile[16](print_reads.sorted.cram, .bam, print_reads.fasta) | 0.252s | passed |
| testFileToFile[17](print_reads.sorted.cram, .cram, print_reads.fasta) | 0.248s | passed |
| testFileToFile[18](print_reads.sorted.queryname.sam, .sam, null) | 0.189s | passed |
| testFileToFile[19](print_reads.sorted.queryname.sam, .bam, null) | 0.199s | passed |
| testFileToFile[1](print_reads.sam, .bam, null) | 0.256s | passed |
| testFileToFile[20](print_reads.sorted.queryname.sam, .cram, print_reads.fasta) | 0.208s | passed |
| testFileToFile[21](print_reads.sorted.queryname.bam, .sam, null) | 0.342s | passed |
| testFileToFile[22](print_reads.sorted.queryname.bam, .bam, null) | 0.365s | passed |
| testFileToFile[23](print_reads.sorted.queryname.bam, .cram, print_reads.fasta) | 0.361s | passed |
| testFileToFile[24](print_reads.sorted.queryname.cram, .sam, print_reads.fasta) | 0.297s | passed |
| testFileToFile[25](print_reads.sorted.queryname.cram, .bam, print_reads.fasta) | 0.319s | passed |
| testFileToFile[26](print_reads.sorted.queryname.cram, .cram, print_reads.fasta) | 0.307s | passed |
| testFileToFile[27](print_reads.sorted.queryname.htsjdk-2.1.0.cram, .cram, print_reads.fasta) | 0.317s | passed |
| testFileToFile[28](print_reads.sorted.queryname.htsjdk-2.1.0.cram, .sam, print_reads.fasta) | 0.295s | passed |
| testFileToFile[2](print_reads.sam, .cram, print_reads.fasta) | 0.307s | passed |
| testFileToFile[3](print_reads.bam, .sam, null) | 0.412s | passed |
| testFileToFile[4](print_reads.bam, .bam, null) | 0.396s | passed |
| testFileToFile[5](print_reads.bam, .cram, print_reads.fasta) | 0.413s | passed |
| testFileToFile[6](print_reads.cram, .sam, print_reads.fasta) | 0.335s | passed |
| testFileToFile[7](print_reads.cram, .bam, print_reads.fasta) | 0.348s | passed |
| testFileToFile[8](print_reads.cram, .cram, print_reads.fasta) | 0.325s | passed |
| testFileToFile[9](print_reads.sorted.sam, .sam, null) | 0.172s | passed |
| testNonExistentReference | 0.068s | passed |
| testReadAndWriteCRAMAndReferenceOnHDFS | 4.991s | passed |
| testReadFiltering | 0.185s | passed |
| testReadFiltering_asIntegrationTestSpec | 0.194s | passed |
| testReadFilters[0](print_reads_one_malformed_read.sam, null, .sam, [], 7) | 0.159s | passed |
| testReadFilters[10](print_reads.sorted.bam, null, .sam, [--read-filter, ReadLengthReadFilter, --min-read-length, 100, --max-read-length, 101], 8) | 0.238s | passed |
| testReadFilters[11](print_reads.sorted.bam, null, .sam, [--read-filter, ReadNameReadFilter, --read-name, both_reads_align_clip_adapter, --read-filter, ReadLengthReadFilter, --min-read-length, 100, --max-read-length, 101], 2) | 0.249s | passed |
| testReadFilters[12](print_reads.sorted.cram, print_reads.fasta, .sam, [--read-filter, ReadNameReadFilter, --read-name, both_reads_align_clip_adapter, --read-filter, ReadLengthReadFilter, --min-read-length, 100, --max-read-length, 101], 2) | 0.216s | passed |
| testReadFilters[1](print_reads_one_malformed_read.sam, null, .sam, [--disable-tool-default-read-filters], 8) | 0.154s | passed |
| testReadFilters[2](print_reads_one_malformed_read.sam, null, .sam, [--disable-read-filter, WellformedReadFilter], 8) | 0.153s | passed |
| testReadFilters[3](print_reads.sorted.sam, null, .sam, [--disable-tool-default-read-filters], 8) | 0.167s | passed |
| testReadFilters[4](print_reads.sorted.sam, null, .sam, [--read-filter, ReadNameReadFilter, --read-name, both_reads_align_clip_adapter], 2) | 0.158s | passed |
| testReadFilters[5](print_reads.sorted.sam, null, .sam, [--read-filter, ReadLengthReadFilter, --min-read-length, 100, --max-read-length, 200], 8) | 0.160s | passed |
| testReadFilters[6](print_reads.sorted.sam, null, .sam, [--read-filter, ReadLengthReadFilter, --min-read-length, 1, --max-read-length, 10], 0) | 0.157s | passed |
| testReadFilters[7](print_reads.sorted.sam, null, .sam, [--read-filter, ReadNameReadFilter, --read-name, both_reads_align_clip_adapter, --read-filter, ReadLengthReadFilter, --min-read-length, 100, --max-read-length, 101], 2) | 0.164s | passed |
| testReadFilters[8](print_reads.sorted.bam, null, .sam, [--disable-tool-default-read-filters], 8) | 0.235s | passed |
| testReadFilters[9](print_reads.sorted.bam, null, .sam, [--read-filter, ReadNameReadFilter, --read-name, both_reads_align_clip_adapter], 2) | 0.235s | passed |
| testReadThatConsumesNoReferenceBases | 0.264s | passed |
| testSBIIndexGranularityArgument[0](1) | 0.443s | passed |
| testSBIIndexGranularityArgument[1](100) | 0.415s | passed |
| testSequenceDictionaryValidation | 0.092s | passed |
| testUnSorted | 0.259s | passed |
| testUnSortedRoundTrip | 0.199s | passed |
| testUnmappedReadInclusion[0](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, [unmapped], [u1, u2, u3, u4, u5]) | 0.259s | passed |
| testUnmappedReadInclusion[10](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.cram, /home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta, [20:10000009-10000011, unmapped], [a, b, c, d, e, g, h, h, i, i]) | 0.423s | passed |
| testUnmappedReadInclusion[11](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.cram, /home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta, [20:10000009-10000013, unmapped], [a, b, c, d, e, f, f, g, h, h, i, i]) | 0.425s | passed |
| testUnmappedReadInclusion[1](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, [/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_unmapped.intervals], [u1, u2, u3, u4, u5]) | 0.261s | passed |
| testUnmappedReadInclusion[2](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, [1:200-300, unmapped], [a, b, c, u1, u2, u3, u4, u5]) | 0.264s | passed |
| testUnmappedReadInclusion[3](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, [1:200-300, 4:700-701, unmapped], [a, b, c, k, u1, u2, u3, u4, u5]) | 0.259s | passed |
| testUnmappedReadInclusion[4](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_with_unmapped.bam, null, [/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/reads_data_source_test1_unmapped2.intervals], [a, b, c, k, u1, u2, u3, u4, u5]) | 0.260s | passed |
| testUnmappedReadInclusion[5](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, null, [unmapped], [g, h, h, i, i]) | 0.263s | passed |
| testUnmappedReadInclusion[6](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, null, [20:10000009-10000011], [a, b, c, d, e]) | 0.257s | passed |
| testUnmappedReadInclusion[7](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, null, [20:10000009-10000011, unmapped], [a, b, c, d, e, g, h, h, i, i]) | 0.259s | passed |
| testUnmappedReadInclusion[8](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.bam, null, [20:10000009-10000013, unmapped], [a, b, c, d, e, f, f, g, h, h, i, i]) | 0.528s | passed |
| testUnmappedReadInclusion[9](/home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/engine/CEUTrio.HiSeq.WGS.b37.NA12878.snippet_with_unmapped.cram, /home/runner/work/gatk/gatk/src/test/resources/large/human_g1k_v37.20.21.fasta, [unmapped], [g, h, h, i, i]) | 0.345s | passed |
Standard output
-------------------------------------------------------------------------------- [17:46:08] Executing test PrintReadsSparkIntegrationTest:testReadFiltering_asIntegrationTestSpec
Standard error
[October 27, 2025 at 5:45:59 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.04 minutes. Runtime.totalMemory()=524288000 [October 27, 2025 at 5:46:00 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=524288000 [October 27, 2025 at 5:46:00 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=524288000 [October 27, 2025 at 5:46:00 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=524288000 [October 27, 2025 at 5:46:01 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:01 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:01 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:02 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:02 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:02 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:03 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:03 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:03 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:03 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:03 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:04 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:04 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:04 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:04 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:05 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:05 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:05 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:05 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:06 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:07 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:08 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:09 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:09 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:09 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:09 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:09 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:09 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:10 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:10 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:10 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:10 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:11 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:11 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:11 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:11 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:11 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:12 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:12 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:12 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:12 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:13 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:13 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:13 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:14 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:14 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=526385152 [October 27, 2025 at 5:46:15 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=591396864 [October 27, 2025 at 5:46:15 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:20 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.02 minutes. Runtime.totalMemory()=935329792 17:46:20.423 ERROR DataNode - Command processor encountered interrupt and exit. [October 27, 2025 at 5:46:20 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:21 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.01 minutes. Runtime.totalMemory()=935329792 [October 27, 2025 at 5:46:21 PM UTC] org.broadinstitute.hellbender.tools.spark.pipelines.PrintReadsSpark done. Elapsed time: 0.00 minutes. Runtime.totalMemory()=935329792