Class org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounterIntegrationTest
Tests
| Test |
Duration |
Result |
| testASEReadCounterFileFormat |
0.292s |
passed |
| testASEReadCounterImproperPairs |
4.383s |
passed |
| testASEReadCounterMinDepth70 |
0.230s |
passed |
| testASEReadCounterMultipleContexts |
0.139s |
passed |
| testASEReadCounterNonRefAllele |
0.141s |
passed |
| testASEReadCounterWarnings |
0.229s |
passed |
| testASEReadCounterWithCountOverlaps |
0.228s |
passed |
| testASEReadCounterWithCountReads |
0.231s |
passed |
| testASEReadCounterWithHighMQ |
0.228s |
passed |
| testASEReadCounterWithHighMQLowBQ |
0.229s |
passed |
| testASEReadCounterWithLowMQ |
0.229s |
passed |
| testASEReadCounterWithLowMQNoDedup |
0.238s |
passed |
Standard output
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[17:55:38] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
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[17:55:39] Executing test ASEReadCounterIntegrationTest:test improper pairs
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[17:55:43] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[17:55:44] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[17:55:44] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[17:55:44] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[17:55:45] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[17:55:45] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
--------------------------------------------------------------------------------
[17:55:45] Executing test ASEReadCounterIntegrationTest:test high mq with no read passing
Standard error
[October 27, 2025 at 5:55:39 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:43 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.07 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:43 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:44 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:45 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:45 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:45 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:45 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.ASEReadCounter done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728