Class org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluationIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.rnaseq > GeneExpressionEvaluationIntegrationTest
11

tests
0

failures
0

ignored
11.789s

duration
100%

successful

Tests

Test Duration Result
assertThatExpectedOutputUpdateToggleIsDisabled 0s passed
testCompareReadStrands[0](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, exon, false) 6.004s passed
testCompareReadStrands[1](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, CDS, true) 1.804s passed
testConsistentWithPast[0](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.ignore.tsv, exon, false) 0.740s passed
testConsistentWithPast[1](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.ignore.tsv, exon, false) 0.752s passed
testConsistentWithPast[2](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, PROPORTIONAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.proportional.map.equal.tsv, exon, false) 0.744s passed
testConsistentWithPast[3](/home/runner/work/gatk/gatk/src/test/resources/large/NA12878.RNAseq.with.mate.info.bam, /home/runner/work/gatk/gatk/src/test/resources/large/Homo_sapiens.GRCh37.20.gff3, EQUAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/expected.overlap.equal.map.equal.tsv, exon, false) 0.842s passed
testConsistentWithPast[4](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.ignore.tsv, CDS, true) 0.234s passed
testConsistentWithPast[5](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, EQUAL, IGNORE, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.ignore.tsv, CDS, true) 0.219s passed
testConsistentWithPast[6](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, PROPORTIONAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.proportional.map.equal.tsv, CDS, true) 0.235s passed
testConsistentWithPast[7](/home/runner/work/gatk/gatk/src/test/resources/large/E_Coli_small_rna.bam, /home/runner/work/gatk/gatk/src/test/resources/large/E_Coli.gff3, EQUAL, EQUAL, /home/runner/work/gatk/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/rnaseq/GeneExpressionEvaluation/e_coli_expected.overlap.equal.map.equal.tsv, CDS, true) 0.215s passed

Standard error

[October 27, 2025 at 5:55:46 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:47 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:48 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:49 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:50 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:51 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:51 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:52 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:53 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:54 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:55 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:55 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1969225728
[October 27, 2025 at 5:55:56 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1979711488
[October 27, 2025 at 5:55:56 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1979711488
[October 27, 2025 at 5:55:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1979711488
[October 27, 2025 at 5:55:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1979711488
[October 27, 2025 at 5:55:57 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.GeneExpressionEvaluation done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1979711488