Class org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReadsIntegrationTest
Tests
| Test |
Duration |
Result |
| testLargeFileThatForcesSnappyUsage |
15.447s |
passed |
| testSplitsFixNDN |
0.105s |
passed |
| testSplitsOfUnpairedAndUnmappedReads |
1.799s |
passed |
| testSplitsTargetRegionFunctionality |
0.267s |
passed |
| testSplitsWithOverhangs |
0.491s |
passed |
| testSplitsWithOverhangs0Mismatches |
0.369s |
passed |
| testSplitsWithOverhangs5BasesInOverhang |
0.364s |
passed |
| testSplitsWithOverhangsNotClipping |
0.341s |
passed |
| testSplitsWithoutSecondaryAlignments |
0.445s |
passed |
Standard output
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[17:56:13] Executing test SplitNCigarReadsIntegrationTest:test fix NDN
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[17:56:13] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[17:56:14] Executing test SplitNCigarReadsIntegrationTest:regression test for unmapped and unpaired reads
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[17:56:15] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
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[17:56:15] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 0 mismatches
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[17:56:16] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs 5 bases in overhang
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[17:56:16] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs not clipping
--------------------------------------------------------------------------------
[17:56:16] Executing test SplitNCigarReadsIntegrationTest:test splits with overhangs
Standard error
[October 27, 2025 at 5:56:13 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.26 minutes.
Runtime.totalMemory()=1457520640
[October 27, 2025 at 5:56:13 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1457520640
[October 27, 2025 at 5:56:14 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1457520640
[October 27, 2025 at 5:56:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1457520640
[October 27, 2025 at 5:56:15 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1457520640
[October 27, 2025 at 5:56:16 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1457520640
[October 27, 2025 at 5:56:16 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1457520640
[October 27, 2025 at 5:56:16 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=1457520640
[October 27, 2025 at 5:56:17 PM UTC] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 0.01 minutes.
Runtime.totalMemory()=1457520640