Class org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariantsIntegrationTest

all > org.broadinstitute.hellbender.tools.walkers.variantutils > SelectVariantsIntegrationTest
88

tests
0

failures
0

ignored
6.851s

duration
100%

successful

Tests

Test Duration Result
testAlleleTrimming 0.077s passed
testCombineInfoAndGenotypeJexl 0.078s passed
testComplexSelection 0.081s passed
testComplexSelectionWithNonExistingSamples 0.077s passed
testConcordance 0.078s passed
testDiscordance 0.078s passed
testDropAnnotations[0](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894, testSelectVariants_DropAnnotations.vcf, standard) 0.076s passed
testDropAnnotations[1](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -DA NotAnAnnotation -DGA AlsoNotAnAnnotation, testSelectVariants_DropAnnotations.vcf, unused_annotations) 0.078s passed
testDropAnnotations[2](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'FisherStrand > 10.0', testSelectVariants_DropAnnotationsSelectFisherStrand.vcf, select_on_dropped_annotation) 0.073s passed
testDropAnnotations[3](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'RMSMAPQ > 175.0', testSelectVariants_DropAnnotationsSelectRMSMAPQ.vcf, select_on_kept_annotation) 0.075s passed
testDropAnnotations[4](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'vc.getGenotype("NA11894").getExtendedAttribute("RD")>6', testSelectVariants_DropAnnotationsSelectRD.vcf, select_on_dropped_genotype_annotation) 0.080s passed
testDropAnnotations[5](-DA FisherStrand -DA OnOffGenotype -DGA RD -sn NA11894 -select 'vc.getGenotype("NA11894").getGQ()==1', testSelectVariants_DropAnnotationsSelectGQ.vcf, select_on_kept_genotype_annotation) 0.076s passed
testEmptyVcfException 0.072s passed
testExcludeSelectionIDFromFile 0.076s passed
testExcludeSelectionIDLiteral 0.072s passed
testExcludeSelectionType 0.074s passed
testExpressionSelection 0.074s passed
testFORMATFieldGivenToSelect 0.077s passed
testFileWithoutInfoLineInHeader 0.076s passed
testFileWithoutInfoLineInHeaderWithOverride 0.072s passed
testHaploid 0.078s passed
testINFOFieldGivenToSelectGenotype 0.076s passed
testInvalidJexl 0.073s passed
testInvertJexlSelection 0.075s passed
testInvertMendelianViolationSelection 0.079s passed
testInvertSelection 0.072s passed
testJEXLFilterFirst 0.150s passed
testJexlDirectlyAccessGenotype 0.078s passed
testJexlGenotypeFilter 0.075s passed
testKeepOriginalAC 0.080s passed
testKeepOriginalACAndENV 0.075s passed
testKeepOriginalDP 0.082s passed
testKeepSelectionIDFromFile 0.076s passed
testKeepSelectionIDLiteral 0.075s passed
testLogicalAndOrInJexl 0.076s passed
testManyAllelicWithoutPLsDoesntFreeze 0.087s passed
testMaxFilteredGenotypesSelection 0.077s passed
testMaxFractionFilteredGenotypesSelection 0.075s passed
testMaxIndelLengthSelection 0.074s passed
testMaxNoCall0_25 0.072s passed
testMaxNoCall0_5 0.073s passed
testMaxNoCall1 0.071s passed
testMaxNoCall2 0.076s passed
testMendelianViolationSelection 0.079s passed
testMinFilteredGenotypesSelection 0.073s passed
testMinFractionFilteredGenotypesSelection 0.073s passed
testMinIndelLengthSelection 0.073s passed
testMissingVcfException 0.068s passed
testMultiAllelicAnnotationOrdering 0.075s passed
testMultipleINFOJexls 0.073s passed
testMultipleRecordsAtOnePosition 0.072s passed
testNoGTs 0.073s passed
testNonExistentSampleFile 0.063s passed
testNonExistingFieldSelection 0.073s passed
testNotFileVcfException 0.067s passed
testOutputOnlyStartingInInterval 0.072s passed
testRemoveMLE 0.071s passed
testRemoveSingleSpanDelAllele 0.074s passed
testRemoveSingleSpanDelAlleleExNonVar 0.091s passed
testRemoveSingleSpanDelAlleleNoSpanDel 0.075s passed
testRepeatedLineSelectionAndExludeFiltered 0.078s passed
testResortingFileWarning 0.073s passed
testSACDiploid 0.081s passed
testSACNonDiploid 0.081s passed
testSACSimpleDiploid 0.079s passed
testSampleExclusionFromFileAndSeparateSample 0.077s passed
testSampleExclusionJustFromExpression 0.079s passed
testSampleExclusionJustFromFile 0.076s passed
testSampleExclusionJustFromNegationExpression 0.078s passed
testSampleInclusionWithNonexistingSamples 0.079s passed
testSampleSelection 0.080s passed
testSelectFromMultiAllelic 0.091s passed
testSelectRandomFraction 0.086s passed
testSetFilteredGtoNocall 0.075s passed
testSetFilteredGtoNocallUpdateInfo 0.077s passed
testTetraDiploid 0.078s passed
testTetraploid 0.081s passed
testUntrimmedVariants 0.075s passed
testUntrimmedVariantsWithSetFilteredGtToNocall 0.075s passed
testUnusedAlleleTrimming[0](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/forHardLeftAlignVariantsTest.vcf, --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleHardLeftTrim.vcf) 0.076s passed
testUnusedAlleleTrimming[1](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/forHardLeftAlignVariantsTest.vcf, null, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleHardLeft.vcf) 0.076s passed
testUnusedAlleleTrimming[2](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCT.vcf) 0.075s passed
testUnusedAlleleTrimming[3](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTEnv.vcf) 0.076s passed
testUnusedAlleleTrimming[4](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTTrim.vcf) 0.074s passed
testUnusedAlleleTrimming[5](src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf, -sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants --remove-unused-alternates, src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/expected/testSelectVariants_UnusedAlleleCCCTTrimAltEnv.vcf) 0.079s passed
testUseCorrectDPInJexl 0.158s passed
testVariantTypeSelection 0.075s passed
testVariantTypeSelectionForGVCF 0.073s passed

Standard output

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[17:58:30] Executing test SelectVariantsIntegrationTest:testAlleleTrimming
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[17:58:30] Executing test SelectVariantsIntegrationTest:testComplexSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:30] Executing test SelectVariantsIntegrationTest:testComplexSelectionWithNonExistingSamples--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:30] Executing test SelectVariantsIntegrationTest:testConcordance--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:31] Executing test SelectVariantsIntegrationTest:testDiscordance--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--standard
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[17:58:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--unused_annotations
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[17:58:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_dropped_annotation
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[17:58:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_kept_annotation
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[17:58:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_dropped_genotype_annotation
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[17:58:31] Executing test SelectVariantsIntegrationTest:testDropAnnotations--select_on_kept_genotype_annotation
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[17:58:31] Executing test SelectVariantsIntegrationTest:testEmptyVcfException--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/reallyEmpty.vcf
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[17:58:31] Executing test SelectVariantsIntegrationTest:testExcludeSelectionIDFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:58:31] Executing test SelectVariantsIntegrationTest:testExcludeSelectionIDLiteral--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:58:31] Executing test SelectVariantsIntegrationTest:testExcludeSelectionType--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:58:31] Executing test SelectVariantsIntegrationTest:testSimpleExpressionSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteringDepthInFormat.vcf
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[17:58:32] Executing test SelectVariantsIntegrationTest:testSelectVariants_FileWithoutInfoLineInHeader
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[17:58:32] Executing test SelectVariantsIntegrationTest:testSelectVariants_FileWithoutInfoLineInHeaderWithOverride
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[17:58:32] Executing test SelectVariantsIntegrationTest:testHaploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/haploid-multisample.vcf
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[17:58:32] Executing test SelectVariantsIntegrationTest:InvalidJexl
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[17:58:32] Executing test SelectVariantsIntegrationTest:testInvertJexlSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:32] Executing test SelectVariantsIntegrationTest:testInvertMendelianViolationSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[17:58:32] Executing test SelectVariantsIntegrationTest:testInvertSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:32] Executing test SelectVariantsIntegrationTest:testKeepOriginalAC--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.loseAlleleInSelection.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testKeepOriginalACAndENV--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.loseAlleleInSelection.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testKeepOriginalDP--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testKeepSelectionIDFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testKeepSelectionIDLiteral--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testMaxFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testMaxFractionFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testMaxIndelLengthSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testMaxNoCall0_25--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testMaxNoCall0_5--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testMaxNoCall1--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[17:58:33] Executing test SelectVariantsIntegrationTest:testMaxNoCall2--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.forNoCallFiltering.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testMendelianViolationSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/CEUtrioTest.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testMinFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testMinFractionFilteredGenotypesSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testMinIndelLengthSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testMissingVcfException--test.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:test multi allelic annotation ordering --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic-ordering.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testMultipleRecordsAtOnePosition--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/selectVariants.onePosition.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testNoGTs--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcf4.1.example.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testNonExistentSampleFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testNonExistingSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:34] Executing test SelectVariantsIntegrationTest:testNotFileVcfException--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/
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[17:58:34] Executing test SelectVariantsIntegrationTest:test that variant interval output filter mode is applied
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[17:58:34] Executing test SelectVariantsIntegrationTest:testRemoveMLE--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample.withMLE.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:test removes variant line where '*' is only ALT allele --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:test will not remove variant line where '*' is only ALT allele because --exclude-non-variants not called --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:test encounter no instance of '*' as only ALT allele and ensure line is removed when only monomorphic allele existssrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/spanning_deletion.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testRepeatedLineSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/test.dup.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testSACDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/diploid-multisample-sac.g.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testSACNonDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetraploid-multisample-sac.g.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testSACSimpleDiploidsrc/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/261_S01_raw_variants_gvcf.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testSampleExclusionFromFileAndSeparateSample--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromExpression--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromFile--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testSampleExclusionJustFromRegexExpression--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:35] Executing test SelectVariantsIntegrationTest:testSampleInclusionWithNonexistingSamples--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:36] Executing test SelectVariantsIntegrationTest:testSampleSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/vcfexample2.vcf
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[17:58:36] Executing test SelectVariantsIntegrationTest:test select from multi allelic with exclude-non-variants --src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/multi-allelic.bi-allelicInGIH.vcf
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[17:58:36] Executing test SelectVariantsIntegrationTest:testSetFilteredGtoNocall--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/filteredSamples.vcf
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[17:58:36] Executing test SelectVariantsIntegrationTest:testSetFilteredGtoNocallUpdateInfo--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/selectVariantsInfoField.vcf
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[17:58:36] Executing test SelectVariantsIntegrationTest:testTetraDiploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetra-diploid.vcf
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[17:58:36] Executing test SelectVariantsIntegrationTest:testTetraploid--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/tetraploid-multisample.vcf
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[17:58:36] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (forHardLeftAlignVariantsTest.vcf,--remove-unused-alternates)
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[17:58:36] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (forHardLeftAlignVariantsTest.vcf,(none))
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[17:58:36] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT)
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[17:58:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants)
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[17:58:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --remove-unused-alternates)
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[17:58:37] Executing test SelectVariantsIntegrationTest:testUnusedAlleleTrimming: (multi-allelic-ordering.vcf,-sn SAMPLE-CC -sn SAMPLE-CT --exclude-non-variants --remove-unused-alternates)
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[17:58:37] Executing test SelectVariantsIntegrationTest:testVariantTypeSelection--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/complexExample1.vcf
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[17:58:37] Executing test SelectVariantsIntegrationTest:testVariantTypeSelectionForGVCF--src/test/resources/org/broadinstitute/hellbender/tools/walkers/variantutils/SelectVariants/gvcfExample.g.vcf

Standard error

[October 27, 2025 at 5:58:30 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:30 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:30 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:30 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:31 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
[October 27, 2025 at 5:58:32 PM UTC] org.broadinstitute.hellbender.tools.walkers.variantutils.SelectVariants done. Elapsed time: 0.00 minutes.
Runtime.totalMemory()=769654784
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